View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_2 (Length: 874)
Name: NF1359_high_2
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 818; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 6 - 867
Target Start/End: Complemental strand, 38709929 - 38709068
Alignment:
| Q |
6 |
acttctgaacaacctaacccttcactaaaacatctaacatctgatgtggtaatcccactaacagttgttcaacaccatgaaaccatacaagtgtgtagta |
105 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38709929 |
acttctgaacaaaccaacccttcactaaaacatctaacatctgatgtggtaatcccactaacagttgttcaacaccatgaaaccatagaagtgtgtagta |
38709830 |
T |
|
| Q |
106 |
attcaccagaggactcttgtagaatggtttattaaagtccttaagaaaatggatttagttgatctcataaagaattttgccaggaaaatagaggttccca |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709829 |
attcaccagaggactcttgtagaatggtttattaaagtccttaagaaaatggatttagttgatctcataaagaattttgccaggaaaatagaggttccca |
38709730 |
T |
|
| Q |
206 |
gaccacctaccattgcagatactacattcaatcaaaatcttaaggcattaggtttattggtcatttatatgctttagaagtacacatggatcaattaaat |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709729 |
gaccacctaccattgcagataccacattcaatcaaaatcttaaggcattaggtttattggtcatttatatgctttagaagtacacatggatcaattaaat |
38709630 |
T |
|
| Q |
306 |
acctttcgaagtattagttcatgggtgcaatcgatatcttttagaagtattagttcatggtataataaaaagaaatgatgtccgatagataagtcctgga |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709629 |
acctttcgaagtattagttcatgggtgcaatcgatatcttttagaagtattagttcatggtataataaaaagaaatgatgtccgatagataagtcctgga |
38709530 |
T |
|
| Q |
406 |
ggttcagatcgaattgctagatatatgatatttcatagttataacccgagacatatctactaaattgattcccttaaaagttaaaacatatttgagggcc |
505 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709529 |
ggttcagatcgaattgctagatatatgatatctcatagttataacccgagacatatctactaaattgattcccttaaaagttaaaacatatttgagggcc |
38709430 |
T |
|
| Q |
506 |
aaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagt |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709429 |
aaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagt |
38709330 |
T |
|
| Q |
606 |
tacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaata |
705 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709329 |
tacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaata |
38709230 |
T |
|
| Q |
706 |
tctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttg |
805 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709229 |
tctgacttcaccccagtttcagcattaacaatctctccattcttttccacacggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttg |
38709130 |
T |
|
| Q |
806 |
tgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcatctca |
867 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38709129 |
tgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctca |
38709068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 614 - 867
Target Start/End: Complemental strand, 10047358 - 10047105
Alignment:
| Q |
614 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
713 |
Q |
| |
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|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
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| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
714 |
catcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctca |
813 |
Q |
| |
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|| ||||||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||| | |||||||| |||||| |
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| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
814 |
tcaattttttcctttatatacatcatagccagctcactcaccacattcatctca |
867 |
Q |
| |
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||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||| |
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| T |
10047158 |
tcaatttcttcccttataagcatcatagatagctctgtcaccacattcttctca |
10047105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 504 - 567
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
504 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
567 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
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|
| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 688 - 820
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
688 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
787 |
Q |
| |
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|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
788 |
catcaatgtatacagttgtgttctcatcaattt |
820 |
Q |
| |
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|||| ||||| || ||||| ||||||||||||| |
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|
| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 674 - 848
Target Start/End: Original strand, 739517 - 739691
Alignment:
| Q |
674 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
773 |
Q |
| |
|
||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
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|
| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
|
| Q |
774 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctc |
848 |
Q |
| |
|
||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |
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|
| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctc |
739691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 559
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
486 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
559 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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