View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_31 (Length: 321)
Name: NF1359_high_31
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 50083312 - 50083602
Alignment:
| Q |
29 |
aacaaactcctccttacattctaagatgattacctagttcttttcttttt---aaagaaaaatgattacctatttaactgtttcacatatgttattgtat |
125 |
Q |
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| T |
50083312 |
aacaaactcctacttacattctaagatgattacctagttctttttttttttttaaagaaaaatgattacctatttaactgtttcacatatgttattgtat |
50083411 |
T |
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| Q |
126 |
aattttgacatttaatatatttatttatctatttgcaaaaattatnnnnnnnnnnnnttgatatttcaaaaatattaattggaaaaaatccaacatctaa |
225 |
Q |
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| T |
50083412 |
aattttgacatttaatatatttatttatctatttgcaaaaattatataaaaaaaaatttgatatttcaaaaatattaattggaaaaaatccaacatctaa |
50083511 |
T |
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| Q |
226 |
tatgatatcatctggtgctttcaatcaaatacgcccaaccattttaggacggaggggtaagcaattaaaatattaatacagtataatctac |
316 |
Q |
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| T |
50083512 |
tatgatatcatctggtgctttcaatcaaatacgcccaaccattttaggacggaggggtaagcaattaaaatattaatacagtataacctac |
50083602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 8340511 - 8340555
Alignment:
| Q |
114 |
atgttattgtataattttgacatttaatatatttatttatctatt |
158 |
Q |
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| T |
8340511 |
atgttaatgtataattttgccatttaatatatttaattatctatt |
8340555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 33451952 - 33451887
Alignment:
| Q |
105 |
gtttcacatatgttattgtataattttgacatttaatatatttatttatctatttgcaaaaattat |
170 |
Q |
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| T |
33451952 |
gtttgacatatgtgaatgtacaattttgacatttaatatctttaaatatctattagcaaaatttat |
33451887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 53801205 - 53801156
Alignment:
| Q |
106 |
tttcacatatgttattgtataattttgacatttaatatatttatttatct |
155 |
Q |
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| T |
53801205 |
tttcacacattttatcgtataattttgacttttaatatatttaattatct |
53801156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 730923 - 730858
Alignment:
| Q |
104 |
tgtttcacatatgttattgtataattttgacatttaatatatttatttatctatttgcaaaaatta |
169 |
Q |
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| T |
730923 |
tgtttcacataagctaatgcaaaattttgaccttcaatatatttaattatctattagcaaaaatta |
730858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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