View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_50 (Length: 252)
Name: NF1359_high_50
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 48203590 - 48203369
Alignment:
| Q |
29 |
atgttaaatgtcttaagagatatagttagcctacctccaaatgtaggtaattaatgaaacaatttatatggaggttatcgtcattacctctacaaatttt |
128 |
Q |
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| T |
48203590 |
atgttaaatatcttaagagatatagttagccta--tccaaatgtaggtaattaatgaaacaatttatatggaggttatcgtcattacctctacaaatttt |
48203493 |
T |
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| Q |
129 |
tacagaagtatttttagcttttcaaagggtaaatgtatatatgttgacctctttttaccaaaattaggaatacatgtttttatcccatccttcaacacct |
228 |
Q |
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| T |
48203492 |
tacagcagtatttttagcttttcaaagggtaaatgtatatatgttgacctctttttaccaaaattaggaatacatgtttttatcccatccttcaacacct |
48203393 |
T |
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| Q |
229 |
aaattcaagcaaacattttcggat |
252 |
Q |
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| T |
48203392 |
aaattcaagcaaacattttcggat |
48203369 |
T |
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