View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_53 (Length: 251)
Name: NF1359_high_53
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 12690818 - 12690973
Alignment:
| Q |
88 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
187 |
Q |
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| T |
12690818 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
12690917 |
T |
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| Q |
188 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcgttcatctc |
243 |
Q |
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| T |
12690918 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcgttcatctc |
12690973 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12690790 - 12690833
Alignment:
| Q |
1 |
gctaaagagatttctaatatataatcattaaatcttaactttca |
44 |
Q |
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| T |
12690790 |
gctaaagagatttctaatatataatcattaaatcttaactttca |
12690833 |
T |
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