View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_59 (Length: 239)
Name: NF1359_high_59
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 36615012 - 36614906
Alignment:
| Q |
18 |
tcataggtaaattgggtttaaacttataacgcatatccttttaagtcattgtagatatgcagaatctcataggaaaattgggtttaatctcataggcaaa |
117 |
Q |
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| T |
36615012 |
tcataggtaaattgggtttaaacttataacgcatatccttttaagtcattgtagatatgcagaatctcataggtaaattgggtttaatctcataggtaaa |
36614913 |
T |
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| Q |
118 |
ttgtgat |
124 |
Q |
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||||||| |
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| T |
36614912 |
ttgtgat |
36614906 |
T |
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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 39559257 - 39559352
Alignment:
| Q |
123 |
attcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacgtttccaaaggttccatcgagtttgattggctttataacgtgagc |
218 |
Q |
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| T |
39559257 |
attcgtacagctagagaggttctaaacctatccaatttggtcagagctaacatttccaaaggttccatcgagtttgattggctttataacgtgagc |
39559352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 50814863 - 50814959
Alignment:
| Q |
120 |
gtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacgtttccaaaggttccatcgagtttgattggctttataacgtga |
216 |
Q |
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| T |
50814863 |
gtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggtttacttgagtttgattggctttataacgtga |
50814959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 50861001 - 50860905
Alignment:
| Q |
120 |
gtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacgtttccaaaggttccatcgagtttgattggctttataacgtga |
216 |
Q |
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| T |
50861001 |
gtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggtttacttgagtttgattggctttataacgtga |
50860905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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