View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_63 (Length: 212)
Name: NF1359_high_63
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 45992881 - 45993047
Alignment:
| Q |
17 |
cacagaccacataagcaacaacgagacagaactaatgtacacaaaaaatcaaccactctagtgaacattaaataacttataaaagaactccaagtcatga |
116 |
Q |
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| T |
45992881 |
cacagaccacataagcaacaacgagacagaactagtgtacacaaaaaaccaaccactctagtaaacattaaataacttataaaagaactccaattcatga |
45992980 |
T |
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| Q |
117 |
tcccacacctacaatcttcacacaatgtcatgtcatcatcttcatcatcttcatccggtaaaaaccatggacctttct |
194 |
Q |
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| T |
45992981 |
tcccac--ctacaatcttcacacaatgtcatgtcat---------catcttcatccggtaaaaaccatggacctttct |
45993047 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 35454318 - 35454397
Alignment:
| Q |
74 |
ctagtgaacattaaataacttataaaagaactccaagtcatgatcccacacctacaatcttcacacaatgtcatgtcatcat |
155 |
Q |
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| T |
35454318 |
ctagtgaacattaaacaacttataaaagaacattaactcatgatcc--aatctacaatcttcacacaatttaacgtcatcat |
35454397 |
T |
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