View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1359_high_64 (Length: 210)
Name: NF1359_high_64
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_64 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 45992879 - 45993047
Alignment:
| Q |
13 |
atcacagaccacataagcaacaacgagacagaactaatgtacacaaaaaatcaaccactctagtgaacattaaataacttataaaagaactccaagtcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
45992879 |
atcacagaccacataagcaacaacgagacagaactagtgtacacaaaaaaccaaccactctagtaaacattaaataacttataaaagaactccaattcat |
45992978 |
T |
|
| Q |
113 |
gatcccacacctacaatcttcacacaatgtcatgtcatcatcttcatcatcttcatccggtaaaaaccatggacctttct |
192 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45992979 |
gatcccac--ctacaatcttcacacaatgtcatgtcat---------catcttcatccggtaaaaaccatggacctttct |
45993047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 35454318 - 35454397
Alignment:
| Q |
72 |
ctagtgaacattaaataacttataaaagaactccaagtcatgatcccacacctacaatcttcacacaatgtcatgtcatcat |
153 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || ||||||||| | |||||||||||||||||| | | |||||||| |
|
|
| T |
35454318 |
ctagtgaacattaaacaacttataaaagaacattaactcatgatcc--aatctacaatcttcacacaatttaacgtcatcat |
35454397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University