View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_11 (Length: 475)
Name: NF1359_low_11
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 41706389 - 41705965
Alignment:
| Q |
22 |
cgtcaccgccggcactatcgccgccgtgttcaaataataacatggtgaaagcccagttttctgttcaatctcaggcgccctccggttagatttcctagca |
121 |
Q |
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| T |
41706389 |
cgtcaccgccggcactatcgccgccgtgttcaaataataacatggtgaaagcccagttttctgttcaatctcaggcgccctccggttagatttcctagca |
41706290 |
T |
|
| Q |
122 |
cgacggtcaaacccttccaccaccgagttataaaatttctccggtaacatcgtaaatgtcgtgccggaatccactactacaccgccgtcacctttcttat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706289 |
cgacggtcaaacccttccaccaccgagttataaaatttctccggtaacatcgtaaatgtcgtgccggaatccactactacaccgccgtcacctttcttat |
41706190 |
T |
|
| Q |
222 |
tcaccctccgtaaaatctttggtgctggaacggtcttttttccgacagagattcctttcaagccaacagtgtaaaaataaggatgttttggattttcaag |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41706189 |
tcaccctccgtaaaatctttggtgctggaacggtcttttttccgacagagattcctttcaagccaacagtgtaaaaataagaatgttttggattttcaag |
41706090 |
T |
|
| Q |
322 |
cattgaagtataaacaaactcaacaacttcatcaccattgctctgtttttcatcattgtaacgacctaatatgagtggacttggttttcgaattcgttca |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706089 |
cattgaagtataaacaaactcaacaacttcatcaccattgctctgtttttcatcattgtaacgacctaatatgagtggacttggttttcgaattcgttca |
41705990 |
T |
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| Q |
422 |
gaacgaaaagaatgagaaaccaaac |
446 |
Q |
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||||||||||||||||||||||||| |
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| T |
41705989 |
gaacgaaaagaatgagaaaccaaac |
41705965 |
T |
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