View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_12 (Length: 456)
Name: NF1359_low_12
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 427
Target Start/End: Original strand, 43900950 - 43901366
Alignment:
| Q |
11 |
cagagaacattgcaatttattggggtcaaaataacaatgagggtaccctaacagaaacatgtgcaaaaggaaactacaacaactactcctatgtaatcat |
110 |
Q |
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| T |
43900950 |
cagagaacattgcaatttattggggtcaaaataacaatgagggtaccctaacagaaacatgtgcaaaaggaaactacaacaactactcctatgtaatcat |
43901049 |
T |
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| Q |
111 |
agcttttcttaacaaatttgggaatggaacaacacctgaaatcaacttagcagatcattgtgacccttcttccaatgattgcacaatgttaagcacacac |
210 |
Q |
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| T |
43901050 |
agcttttcttaacaaatttgggaatggaacaacacctgaaatcaacttagcagatcattgtgacccttcttccaatgattgcacaatgttaagcacacac |
43901149 |
T |
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| Q |
211 |
attaagaattgccaaatgaaaaggatcaaagtcttgctttcaattggcggagcagatggagaatatggtttaggttccactgatgatgcaaaaaatgttt |
310 |
Q |
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| T |
43901150 |
attaagaattgccaaatgaaaaggatcaaagtcttgctttcaattggcggagcagatggagaatatggtttaggttccactgatgatgcaaaaaatgttt |
43901249 |
T |
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| Q |
311 |
ctgattacttgtggaacaagtttttgggtggaaattcatcttcacgtccatttggcgatgctatattagatggtattgattttgatattgnnnnnnnctc |
410 |
Q |
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| T |
43901250 |
ctgattacttgtggaacaagtttttgggtggaaattcatcttcacgtccatttggcgatgctatattagatggtattgattttgatattgaaaaaaactc |
43901349 |
T |
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| Q |
411 |
caaaggaaaacaaaacc |
427 |
Q |
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| T |
43901350 |
caaaggaaaacaaaacc |
43901366 |
T |
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