View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_16 (Length: 402)
Name: NF1359_low_16
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 1790420 - 1790033
Alignment:
| Q |
1 |
ctggcttgccggtctcaccgaatccatctattacacaatnnnnnnnngagttaatatatcaacggtgaaaaccttcatagcatagagaaacgtgttatat |
100 |
Q |
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| T |
1790420 |
ctggcttgccggtctcaccgaatccatctattacacaataaaaaaaagagttaatatatcaacggtgaaaaccttcatagcatagagaaacgtgttatat |
1790321 |
T |
|
| Q |
101 |
aaacatttcccatagtgttgtgtaaagaacttacatagaggcttcacagtcaatgacacttcctctcccttcttcatagtttcaacagccattgacaatg |
200 |
Q |
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| T |
1790320 |
aaacatttcccatagtgttgtgtaaagaacttacatagaggcttcacagtcaatgacacttcctctcccttcttcatagtttcaacagccattgacaatg |
1790221 |
T |
|
| Q |
201 |
cacaacaaaaatgacctgtctcatggtgaacattatattagacatcacatatcagaaaaattgaaaatgagagacagaaaccatgataaaatttgttcgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1790220 |
cacaacaaaaatgacctgtctcatggtgaacattatattagacatcacatatcagaaaaattgaaaatgagagacagaaaccatgataaaatttgttcgc |
1790121 |
T |
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| Q |
301 |
actaaccctccttcactgtgaactccactttatcagattttgctactagtgttcatcaacaagatgcgcttcataattcactgcaaca |
388 |
Q |
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| T |
1790120 |
actaaccctccttcactgtgaactccactttatcagattttgctactagtgttcatcaacaagatgcgcttcataattcactgcaaca |
1790033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 92 - 385
Target Start/End: Original strand, 3495847 - 3496139
Alignment:
| Q |
92 |
gtgttatataaacatttcccatagtgttgtgtaaagaacttacatagaggcttcacagtcaatgacacttcctctcccttcttcatagtttcaacagcca |
191 |
Q |
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| T |
3495847 |
gtgttttataaacatttcccaaagtgttgtgtggaaaacttacattgtggcttcacagtcaagatcactttctctcccttcttcatagtcttaacagcct |
3495946 |
T |
|
| Q |
192 |
ttgacaatgcacaacaaaaatgacctgtctcatggtgaacattatattagacatcacatatcagaaaaattgaaaatgagagacagaaaccatgataaaa |
291 |
Q |
| |
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||| ||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| ||||||||||||||| ||||||| |
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| T |
3495947 |
ttggcaatgcaggacaaaaataacctgtctcatggtgaacattatgttagaaatcacata--agaaaatttgaaaacgagagacagaaaccaagataaaa |
3496044 |
T |
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| Q |
292 |
tttgttcgcactaaccctccttcactgtgaactccactttatcagattttgctactagtgtt-catcaacaagatgcgcttcataattcactgca |
385 |
Q |
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| T |
3496045 |
ttagttcacactgaccctccttcactgtgaactccactccatcagattttgctactagtgttccatcatcaagacgcgcttcatacttaactgca |
3496139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 48 - 388
Target Start/End: Original strand, 14389387 - 14389714
Alignment:
| Q |
48 |
gagttaatatatcaacggtgaaaaccttcatagcatagagaaacgtgttatataaacatttcccatagtgttgtgtaaagaacttacatagaggcttcac |
147 |
Q |
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|||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| | | || |||||| |||||||||| | |||||||| |
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| T |
14389387 |
gagttaatatatcaccggtgaaaaccttcatag-----agaaaagtgttatataaacatttccaaaaatgctgtgtagagaacttacactgtggcttcac |
14389481 |
T |
|
| Q |
148 |
agtcaatgacacttcctctcccttcttcatagtttcaacagccattgacaatgcacaacaaaaatgacctgtctcatggtgaacattatattagacatca |
247 |
Q |
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| T |
14389482 |
agtcaatgctacattctctcccttcttcatagtcttaacagcctttgacaatgcaagacaaaaaaaacctgtctcatggtgaacatcatgtt-------a |
14389574 |
T |
|
| Q |
248 |
catatcagaaaaattgaaaatgagagacagaaaccatgataaaatttgttcgcactaaccctccttcactgtgaactccactttatcagattttgctact |
347 |
Q |
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|||| |||||| ||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14389575 |
tatataagaaaatttgaaaa--cgagacagaaatcatgataaaatttgttcacactgaccctccttcactgtgaactccactccatcagattttgctact |
14389672 |
T |
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| Q |
348 |
agtgtt-catcaacaagatgcgcttcataattcactgcaaca |
388 |
Q |
| |
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|||||| ||||| |||||||||||||||| || ||||||||| |
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| T |
14389673 |
agtgttccatcatcaagatgcgcttcatacttaactgcaaca |
14389714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 8627143 - 8627057
Alignment:
| Q |
140 |
ggcttcacagtcaatgacacttcctctcccttcttcatagtttcaacagccattgacaatgcacaacaaaaatgacctgtctcatgg |
226 |
Q |
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| T |
8627143 |
ggcttcacagtcaaaatcgctttctctcccttcttcatggttttaacagcctttgacaatgcaagacaaaaatgacctatcacatgg |
8627057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 3506611 - 3506639
Alignment:
| Q |
318 |
gtgaactccactttatcagattttgctac |
346 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
3506611 |
gtgaactccactttatcagattttgctac |
3506639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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