View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_23 (Length: 378)
Name: NF1359_low_23
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 8873140 - 8873404
Alignment:
| Q |
16 |
atccaaacatgcccttgtatacaaaaccaaaaaagattggatttttaacatgaaaatctcaaaagaaaggattttgaagaaaagggtataagaatttgac |
115 |
Q |
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| T |
8873140 |
atccaaacatgcccttgtatacaaaaccaaaaaagattggatttttaacatgaaaatttcaaaagaaaggattttgaagaaaagggtataagaatttgac |
8873239 |
T |
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| Q |
116 |
atcaaatttcataaagaatgattgaaaagttcataccctttgaacatatgaagagggcatgagagacctaagaacactgagatgatcattcatttggcgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8873240 |
atcaaatttcataaagaatgattgaaaagttcataccctttgaacatatgaagagggcatgagagacctaagaacactgagatgatcattcatttggcgt |
8873339 |
T |
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| Q |
216 |
ctcctattacgttcaacagcaatgtgtgtcattctttggttctcaacatcttccttattcttaac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8873340 |
ctcctattacgttcaacagcaatgtgtgtcattctttgattctcaacatcttccttattcttaac |
8873404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 46921914 - 46921807
Alignment:
| Q |
171 |
ggcatgagagacctaagaacactgagatgatcattcatttggcgtctcctattacgttcaacagcaatgtgtgtcattctttggttctcaacatcttcct |
270 |
Q |
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||||||||||| ||||||||| ||||| ||||||||||| |||||| || ||||| ||||||||||| |||||||| || ||||||| ||||||| |
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| T |
46921914 |
ggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtcattctctgattctcaatttcttcct |
46921815 |
T |
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| Q |
271 |
tattctta |
278 |
Q |
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| T |
46921814 |
tattctta |
46921807 |
T |
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