View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_29 (Length: 353)
Name: NF1359_low_29
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 35366595 - 35366253
Alignment:
| Q |
1 |
tgcagatacgagttttgatgatgttgaatttgaatttcttgatgattgtgatatgggtttaggtaatggtaatagttcaagtagtgatgagtttcatcat |
100 |
Q |
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| T |
35366595 |
tgcagatacgagttttgatgatgttgaatttgaatttcttgatgattgtgatatgggtttaggtattggtaatagttcaagtagtgatgagtttcatcat |
35366496 |
T |
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| Q |
101 |
gataatcatatggagttggatgttgaagaagatgatgataaatgtgagaaggttaatgaagatagcaataatgaaaagaatagaaatttttgggacagcc |
200 |
Q |
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| T |
35366495 |
gataatcatatggagttggatgttgaagaagatgatgataaatgtgagaaggttaatgaagatagcaataatgaaaagaatagaaatttttgggacagcc |
35366396 |
T |
|
| Q |
201 |
aattccagcttttgcaggtaattaatcaattgattcattatccacattcattaattgtgtttttatttattttcttcttgtgctaataggtttttatttc |
300 |
Q |
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| T |
35366395 |
aattccagcttttgcaggtaattaatcaattgattcatgatccacattcattaattgtgtttttatttattttcttcttgtgctaataggtttttatttc |
35366296 |
T |
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| Q |
301 |
taaactataaccttgaattatgatgacttatttgttacctttg |
343 |
Q |
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| T |
35366295 |
taaactataaccttgaattatgatgacttatttgttacctttg |
35366253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 35374414 - 35374202
Alignment:
| Q |
19 |
tgatgttgaatttgaatttcttgatgattgtgatatgggtttaggtaatggtaatagttcaagtagtgatgagtttcatcatgataatcatatggagttg |
118 |
Q |
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| T |
35374414 |
tgatgttgaatttgaatttcttgatgattgtgatatgggtttaggtaatagtaatagttcaagtagtgatgagtttcatcatgataatcatatggagtta |
35374315 |
T |
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| Q |
119 |
gatgttgaagaagatgatgataaat---gtgagaaggttaatgaagatagcaataatgaaaagaatagaaatttttgggacagccaattccagcttttgc |
215 |
Q |
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||| ||||||| || || ||||||| |||||| ||||||||||| | | || |||||| ||||||||||||||||||||| |||| | |||||||||| |
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| T |
35374314 |
gatattgaagatgaggaggataaatctagtgagagggttaatgaaggttgtaacaatgaagagaatagaaatttttgggacaaccaacttcagcttttgc |
35374215 |
T |
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| Q |
216 |
aggtaattaatca |
228 |
Q |
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||||||||||||| |
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| T |
35374214 |
aggtaattaatca |
35374202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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