View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_32 (Length: 342)
Name: NF1359_low_32
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_32 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 36 - 315
Target Start/End: Complemental strand, 2598856 - 2598588
Alignment:
| Q |
36 |
tcaccactagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggggaaaagagatgcggtggcaatattgaaattttagtga |
135 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| | ||||||||||| |||||||||||| || |
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| T |
2598856 |
tcactactagaaaatatacatttgacatcagggttttcaca----------aatacctgaagggaaaagacacgcggtggcaattttgaaattttagcga |
2598767 |
T |
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| Q |
136 |
actttgaagaagtttttcacatcatgctgaggaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaactaatgcttgagggaaaa |
235 |
Q |
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||||||| |||||| ||| ||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2598766 |
actttgatgaagttgttcccatca-gttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaaa |
2598668 |
T |
|
| Q |
236 |
tataaacggggaggcaatttgctaatattagtgaaattttcacataggtgctg--gatagataggggaaaacacactcagat |
315 |
Q |
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|||| ||| | | |||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| |
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| T |
2598667 |
tatatgcggtg--gtaatttggtaatattagtgaaattttcacataggtgctggtgatagatacgagaaaacacactcagat |
2598588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 12699758 - 12699892
Alignment:
| Q |
134 |
gaactttgaagaagtttttcacatcatgctgaggaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaact-aatgcttgaggga |
232 |
Q |
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|||||||| ||||| |||||||| || |||||||||||| || || |||| |||| || ||||| |||||||||||| |||||||| |||| ||||||| |
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| T |
12699758 |
gaactttggagaaggttttcacacca-gctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaaatgactgaggga |
12699856 |
T |
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| Q |
233 |
aaatataaacggggaggcaatttgctaatattagtg |
268 |
Q |
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| T |
12699857 |
aaagataaacgcggtgacaatttcgtaatattagtg |
12699892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 12699696 - 12699757
Alignment:
| Q |
41 |
actagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggggaaa |
102 |
Q |
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| T |
12699696 |
actagaaaatttacatttgacatcagggctttcacatcagtggagaaatacttgaagggaaa |
12699757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 51741421 - 51741478
Alignment:
| Q |
41 |
actagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggg |
98 |
Q |
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| T |
51741421 |
actagaaaaaagacatttgacatcagggttttcacatcagtgcaaaaatacatgaggg |
51741478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 24167163 - 24167264
Alignment:
| Q |
41 |
actagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggggaaa-agagatgcggtggcaatattgaaattttagtgaactt |
139 |
Q |
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|||||||||||||||||| ||| |||| ||||||||| ||| |||||||| |||||||||| | | | |||||||||| ||||||||||||||||||| |
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| T |
24167163 |
actagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaatatacacacggtggcaattttgaaattttagtgaactt |
24167262 |
T |
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| Q |
140 |
tg |
141 |
Q |
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|| |
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| T |
24167263 |
tg |
24167264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 27499710 - 27499674
Alignment:
| Q |
32 |
tctttcaccactagaaaatatacatttgacatcaggg |
68 |
Q |
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|||||||| | |||||||||||||||||||||||||| |
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| T |
27499710 |
tctttcactagtagaaaatatacatttgacatcaggg |
27499674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 5099 - 5199
Alignment:
| Q |
167 |
gaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaactaatgcttgagggaaaatataaacggggaggcaatttgctaatattag |
266 |
Q |
| |
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|||||| |||||||||||| || | || ||||||||| ||||||||||||||||||| |||||| ||| ||||||| || |||||||| ||||||||| |
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| T |
5099 |
gaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtggaactaatgcatgaggggaaacataaacgcggtggcaattttgtaatattag |
5198 |
T |
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| Q |
267 |
t |
267 |
Q |
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| T |
5199 |
t |
5199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 9809527 - 9809427
Alignment:
| Q |
167 |
gaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaactaatgcttgagggaaaatataaacggggaggcaatttgctaatattag |
266 |
Q |
| |
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|||||| ||||||||||||||| | || | ||||||| |||| |||||||||||||| |||||| ||| ||||||| || |||||||| ||||||||| |
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| T |
9809527 |
gaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaacataaacgcggtggcaatttcgtaatattag |
9809428 |
T |
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| Q |
267 |
t |
267 |
Q |
| |
|
| |
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| T |
9809427 |
t |
9809427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 31713443 - 31713486
Alignment:
| Q |
35 |
ttcaccactagaaaatatacatttgacatcagggttttcacatc |
78 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31713443 |
ttcactactagaaaatatacatttgacatcagggttttcacatc |
31713486 |
T |
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