View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_36 (Length: 323)
Name: NF1359_low_36
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 42 - 270
Target Start/End: Complemental strand, 17785363 - 17785135
Alignment:
| Q |
42 |
attccagtctcacaatttctctacccatatcttcaatcatgtcatgcagcctcacatgacgatcatcgatttttatcagactcttatcaaccaatacctg |
141 |
Q |
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| T |
17785363 |
attccagtctcacaatttctctacccatatcttcaatcatgtcatgcagcctcacatgacgatcatcgatttttatcagactcttatcaaccaatacctg |
17785264 |
T |
|
| Q |
142 |
aatagcatagtctgggtcgaagccacgaccactacatagtatgttcaagatatcacttagtctgtatcctttgaaaaagcatgcaatgtctaaaaagatt |
241 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17785263 |
aatagcatagtctgggtcgaagtcacgaccactacatagtatgttcaagatatcacttagtctgtatcctttgaagaagcatgcaatgtctaaaaagatt |
17785164 |
T |
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| Q |
242 |
tccttctcaaattcctttagcctatgata |
270 |
Q |
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|||||| ||||||||||||||| |||||| |
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| T |
17785163 |
tccttcacaaattcctttagcccatgata |
17785135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 260
Target Start/End: Complemental strand, 17802658 - 17802440
Alignment:
| Q |
42 |
attccagtctcacaatttctctacccatatcttcaatcatgtcatgcagcctcacatgacgatcatcgatttttatcagactcttatcaaccaatacctg |
141 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| || |||| |||||||| ||||||||||||| ||| ||||| |
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| T |
17802658 |
attccagcctcacaatttctctacccatatcttcaatcatgtcatgtatcctcacacgatattcattcatttttattagactcttatcaatcaagacctg |
17802559 |
T |
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| Q |
142 |
aatagcatagtctgggtcgaagccacgaccactacatagtatgttcaagatatcacttagtctgtatcctttgaaaaagcatgcaatgtctaaaaagatt |
241 |
Q |
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| T |
17802558 |
gacagcatagtctggggcgtagccacggccactatgtaatatgttcatgacatcacttagtttgtatcctttgaaaaagcaagtgatgtctaaaaagatt |
17802459 |
T |
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| Q |
242 |
tccttctcaaattccttta |
260 |
Q |
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||||| |||||||| |||| |
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| T |
17802458 |
tccttttcaaattctttta |
17802440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 260
Target Start/End: Complemental strand, 17791708 - 17791491
Alignment:
| Q |
43 |
ttccagtctcacaatttctctacccatatcttcaatcatgtcatgcagcctcacatgacgatcatcgatttttatcagactcttatcaaccaatacctga |
142 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||| | ||| | || || | ||||||||||||||| |||| ||| ||||| |
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| T |
17791708 |
ttccagccgcacaatttctctacccatatcttcaatcatgtcatgcattttgacactatagtcttcaaattttatcagactcttgtcaatcaacacctgg |
17791609 |
T |
|
| Q |
143 |
atagcatagtctgggtcgaagccacgaccactacatagtatgttcaagatatcacttagtctgtatcctttgaaaaagcatgcaatgtctaaaaagattt |
242 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||| || |||||||| | ||||||||| ||||| |||| |||||||||||||| |
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| T |
17791608 |
atagcatagtctggggaaaagccacgaccacaacatagtatgttcttgacatcacttaactttgctcctttgaagaagcaagcaaggtctaaaaagattt |
17791509 |
T |
|
| Q |
243 |
ccttctcaaattccttta |
260 |
Q |
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||||||||||||| |||| |
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| T |
17791508 |
ccttctcaaattctttta |
17791491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 17818130 - 17818017
Alignment:
| Q |
44 |
tccagtctcacaatttctctacccatatcttcaatcatgtcatgcagcctcacatgacgatcatcgatttttatcagactcttatcaaccaatacctgaa |
143 |
Q |
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||||| || |||||||||| | |||||||||||||||||| ||||| ||||||| || ||||| |||||||| ||||||||||||| || ||||| | |
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| T |
17818130 |
tccagcctgacaatttctcgatccatatcttcaatcatgtgatgcatcctcacacgatattcatcaatttttattagactcttatcaatcatcacctgga |
17818031 |
T |
|
| Q |
144 |
tagcatagtctggg |
157 |
Q |
| |
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|| |||||||||| |
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| T |
17818030 |
caggatagtctggg |
17818017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 17788543 - 17788497
Alignment:
| Q |
43 |
ttccagtctcacaatttctctacccatatcttcaatcatgtcatgca |
89 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
17788543 |
ttccagccgcacaatttctctacccatatctttaatcatgtcatgca |
17788497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 6140368 - 6140408
Alignment:
| Q |
209 |
cctttgaaaaagcatgcaatgtctaaaaagatttccttctc |
249 |
Q |
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| T |
6140368 |
cctttgaaaaagaatgcaatgtctagaaacatttccttctc |
6140408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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