View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1359_low_39 (Length: 319)

Name: NF1359_low_39
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1359_low_39
NF1359_low_39
[»] chr1 (1 HSPs)
chr1 (10-319)||(34943043-34943352)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 34943043 - 34943352
Alignment:
Q  10 aagaatatgatgctctttaattattttaattcgtactatatatatttttaatagggcatatgcggattagtggtatatataactccatagattgatttga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34943043 aagaatatgatgctctttaattattttaattcgtactatatatatttttaatagggcatatgcggattagtggtatatataactccatagattgatttga 34943142  T
Q  110 aaatattattatcatttgagagacgcaaatggttaaagggaatatattctatgttcgatttcttccttagttgttcttccttccttcttctttagtacat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34943143 aaatattattatcatttgagagacgcaaatggttaaagggaatatattctatgttcgatttcttccttagttgttcttccttccttcttctttagtacat 34943242  T
Q  210 caattaacaaccaaccatggcttccttattatatagaacttttggctatcaaatctcttcatttgtaaaccgttggtttatacaaccatctcatcatcat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34943243 caattaacaaccaaccatggcttccttattatatagaacttttggctatcaaatctcttcatttgtaaaccgttggtttatacaaccatctcatcatcat 34943342  T
Q  310 aatcatagtc 319  Q
    ||||||||||    
T  34943343 aatcatagtc 34943352  T

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