View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_4 (Length: 703)
Name: NF1359_low_4
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 299 - 562
Target Start/End: Complemental strand, 4002404 - 4002141
Alignment:
| Q |
299 |
ttgttaatattatttattatactgggagttggggtcgaacccacgacctctttatctgattaatcttttggttttgtttggatatttgattatgggtaga |
398 |
Q |
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| T |
4002404 |
ttgttaatattatttattatactgggagttggggtcgaacccacgacctctttatctgattaatcttttggttttgtttggatatttgattatgggtaga |
4002305 |
T |
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| Q |
399 |
gtagaatggaagtagataaaatggaatggaattactgtattattgattgatttttgacaatggaatggaatataatgattataatcaggttttcagtctg |
498 |
Q |
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| T |
4002304 |
gtagaatggaagtagataaaatggaatggaattactgtattattgattgatttttgacaatggaatggaatataatgattataatcaggttttcagtctg |
4002205 |
T |
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| Q |
499 |
atagaatggtatgaattatattggaaaatgtttcataggcacccatacattccatatgcacctc |
562 |
Q |
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| T |
4002204 |
atagaatggtatgaattatattggaaaatgtttcatgggcacccatacattccatatgcacctc |
4002141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 81 - 298
Target Start/End: Complemental strand, 4002751 - 4002534
Alignment:
| Q |
81 |
cctgtgataacgaataatgtggcacctaggtttggttttggttttggatcgaagaggaaaacttgtgaacgtgtgagtttggggaagatttcaagttttg |
180 |
Q |
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| T |
4002751 |
cctgtgataacgaataatgtggcacctaggtttggttttggttttggatcgaagaggaaaacttgtgaacgtgtgagtttggggaagatttcaagttttg |
4002652 |
T |
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| Q |
181 |
ttgttagattgttttggagagaagccaaaaggattcaatcgtttcctgttctttctcttgctgctgcattggtgccgccaattcaaaatttgtatgtata |
280 |
Q |
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| T |
4002651 |
ttgttagattgttttggagagaagccaaaaggattcaatcgtttcctgttctttctcttgctgctgcattggtgccgccaattcaaaatttgtatgtata |
4002552 |
T |
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| Q |
281 |
ttatgatttcatatttct |
298 |
Q |
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| T |
4002551 |
ttatgatttcatatttct |
4002534 |
T |
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