View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_41 (Length: 309)
Name: NF1359_low_41
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 2598445 - 2598211
Alignment:
| Q |
5 |
acacattgtcatcaatggtagattacagatctaaagaggtaaacaattttgaaccctaattactttgcaaatctacttgaagaaattcctattgaagagg |
104 |
Q |
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| T |
2598445 |
acacattctcatcaatggtggattacaaatctaaagaggtaaacaattttgaaccctaattacttttcaaatctactcgaatcaattcctattgaagagg |
2598346 |
T |
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| Q |
105 |
aagtggaagatcta------gatcttcatcggttttaggttttcattctagatc------------tacattttcattatatgtgatgaacaattttcac |
186 |
Q |
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| T |
2598345 |
aaacagaagatctagatcaagatcttcatcagtttttggttttcgttctagatctagatctagatatacgttttcgttatatgtgatgaacaattttcac |
2598246 |
T |
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| Q |
187 |
tcttcattcccgtatctagtcctatattgcatttt |
221 |
Q |
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||||||||| | |||||| |||| |||||||||| |
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| T |
2598245 |
tcttcattctcatatctaaacctaaattgcatttt |
2598211 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 34701937 - 34701979
Alignment:
| Q |
235 |
tgatcatggaaagtgtagaaatggaaattttgaggaaactgca |
277 |
Q |
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| T |
34701937 |
tgatcatagaaagtgtagaaatggaaattttgaggaacctgca |
34701979 |
T |
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