View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1359_low_42 (Length: 304)

Name: NF1359_low_42
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1359_low_42
NF1359_low_42
[»] chr4 (3 HSPs)
chr4 (17-111)||(51092804-51092898)
chr4 (175-275)||(51093122-51093222)
chr4 (113-175)||(51093026-51093089)
[»] chr3 (3 HSPs)
chr3 (236-275)||(40339110-40339149)
chr3 (219-274)||(52925733-52925788)
chr3 (233-274)||(8801872-8801913)
[»] chr2 (2 HSPs)
chr2 (236-274)||(36374241-36374279)
chr2 (236-273)||(9958013-9958049)
[»] chr6 (1 HSPs)
chr6 (246-274)||(33136605-33136633)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 51092804 - 51092898
Alignment:
Q  17 ttgccatgcttctcgctgatcttcaggtaccattactttcgttcattttcatgtattcaatgattccataatttatatatttgctgtaaaaagtt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51092804 ttgccatgcttctcgctgatcttcaggtaccattactttcgttcattttcatgtattcaatgattccataatttatatatttgctgtaaaaagtt 51092898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 51093122 - 51093222
Alignment:
Q  175 atatggtagtttacaacttgaccttatatgtatgtgttggtgaaacttttggaggcggtagaattgatttcagaggtgtataattgattttgacatgttt 274  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51093122 atatggaagtttacaacttgaccttatatgtatgcgttggtgaaacttttggaggcggtagaattgatttcagaggtgtataattgattttgacatgttt 51093221  T
Q  275 t 275  Q
    |    
T  51093222 t 51093222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 51093026 - 51093089
Alignment:
Q  113 ttttaatgatttt-ttattcagataagtagttcaccttaactaattaaaaaatagaaaaactta 175  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51093026 ttttaatgatttttttattcagataagtagtttaccttaactaattaaaaaatagaaaaactta 51093089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 40339110 - 40339149
Alignment:
Q  236 aattgatttcagaggtgtataattgattttgacatgtttt 275  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  40339110 aattgattttagaggagtataattgattttgacatgtttt 40339149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 52925788 - 52925733
Alignment:
Q  219 acttttggaggcggtagaattgatttcagaggtgtataattgattttgacatgttt 274  Q
    ||||||||||| |  | ||||||||  |||||||||||||||||||||||||||||    
T  52925788 acttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgttt 52925733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 8801872 - 8801913
Alignment:
Q  233 tagaattgatttcagaggtgtataattgattttgacatgttt 274  Q
    ||||||||||||  ||||||||||||||||||| ||||||||    
T  8801872 tagaattgatttttgaggtgtataattgattttcacatgttt 8801913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 36374241 - 36374279
Alignment:
Q  236 aattgatttcagaggtgtataattgattttgacatgttt 274  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  36374241 aattgattttaaaggtgtataattgattttgacatgttt 36374279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 9958013 - 9958049
Alignment:
Q  236 aattgatttcagaggtgtataattgattttgacatgtt 273  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  9958013 aattgatttcagaggtgta-aattgattttgacatgtt 9958049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 33136633 - 33136605
Alignment:
Q  246 agaggtgtataattgattttgacatgttt 274  Q
    |||||||||||||||||||||||||||||    
T  33136633 agaggtgtataattgattttgacatgttt 33136605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University