View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_46 (Length: 295)
Name: NF1359_low_46
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 35366572 - 35366817
Alignment:
| Q |
21 |
acatcatcaaaactcgtatctgcatattgctgcagtttttgcctagacaattccctgcgaaaaccaacaggcaaatacctagtaacacgggacatagatg |
120 |
Q |
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| T |
35366572 |
acatcatcaaaactcgtatctgcatattgctgcagtttttgcctagacaattccctacgaaaaccaacaggcaaatacctagtaacacgggacatagatg |
35366671 |
T |
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| Q |
121 |
ttgcacccatgatgaatattaacgtggtctctaatgtttgactcagatgttgtgtgtggaaaatagaatgaacaatgaatgtctttttatacaagattag |
220 |
Q |
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| T |
35366672 |
ttgcacccatgatgaatattaacgtggtctctaatgtttgactcaaatgttgtgtgtggaaaatagaatgaacaatgaatgtctttttatacaagattag |
35366771 |
T |
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| Q |
221 |
aaaaatcatcaaagggtgtgacaatatctctctaatcgccgcgaac |
266 |
Q |
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| T |
35366772 |
aaaaatcatcaaagggtgtgacaatatctctctaatcgccacgaac |
35366817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 35374427 - 35374586
Alignment:
| Q |
39 |
tctgcatattgctgcagtttttgcctagacaattccctgcgaaaaccaacaggcaaatacctagtaacacgggacatagatgttgcacccatgatgaata |
138 |
Q |
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| T |
35374427 |
tctgcatattgctgtagtttttgcctagacaattccctacgaaaaccaacaggcaaatacctagtaacacgggacaaagaggttgcacccatgat---ta |
35374523 |
T |
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| Q |
139 |
ttaacgtggtctctaatgtttgactcagatgttgtgtgtggaaaatagaatgaacaatgaatgtctttttatacaaga |
216 |
Q |
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| T |
35374524 |
t----gt-----------tttgactcaaatgttgtgtgtggaaaatagaatgaacaatggatctctttttatacaaga |
35374586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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