View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_48 (Length: 271)
Name: NF1359_low_48
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 42804975 - 42805231
Alignment:
| Q |
1 |
tttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatttattcacaacgcatatgtttat |
100 |
Q |
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| T |
42804975 |
tttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatttattcacaacgcatttgtttat |
42805074 |
T |
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| Q |
101 |
aatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaaccgccaaggatttgtgttgatgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42805075 |
aatttttcagtatttcttggaccacaggatatcaagagctttttgcaatttacattgaaaatgttgtgtatgtcaaccaccaaggatttgtgttgatgcc |
42805174 |
T |
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| Q |
201 |
cttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805175 |
cttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
42805231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 42762573 - 42762821
Alignment:
| Q |
1 |
tttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatttattcacaacgcatatgtttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
42762573 |
tttaatttcatttatgtcgtttttaggggttgaacctatcccgccttcataagatgccctgtcatgaatagcactatttattcacaacgtatttgtttat |
42762672 |
T |
|
| Q |
101 |
aatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaaccgccaaggatttgtgttgatgcc |
200 |
Q |
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| T |
42762673 |
aatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacaatgaaaatgctgtgtatgtcaactgccaaggatttgtgttgatgcc |
42762772 |
T |
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| Q |
201 |
cttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
257 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
42762773 |
cttaccattta--------ttatatttttaatacatctactagaagtttgatgatgt |
42762821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33048919 - 33048988
Alignment:
| Q |
1 |
tttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048919 |
tttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
33048988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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