View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1359_low_49 (Length: 270)

Name: NF1359_low_49
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1359_low_49
NF1359_low_49
[»] chr3 (42 HSPs)
chr3 (4-259)||(19399021-19399276)
chr3 (5-258)||(17941043-17941299)
chr3 (4-259)||(19436178-19436436)
chr3 (9-259)||(19392435-19392688)
chr3 (4-258)||(18146129-18146386)
chr3 (5-258)||(18102741-18102997)
chr3 (5-108)||(19460984-19461087)
chr3 (10-259)||(19350707-19350959)
chr3 (5-251)||(14896835-14897081)
chr3 (5-111)||(18115414-18115520)
chr3 (5-111)||(19333446-19333552)
chr3 (5-111)||(19375143-19375249)
chr3 (5-111)||(18022257-18022363)
chr3 (5-111)||(18164611-18164717)
chr3 (5-107)||(19419448-19419550)
chr3 (8-107)||(19380358-19380457)
chr3 (146-259)||(19413476-19413589)
chr3 (5-258)||(25462352-25462605)
chr3 (4-111)||(18107901-18108008)
chr3 (132-259)||(19460809-19460936)
chr3 (5-259)||(24493863-24494120)
chr3 (145-259)||(18015374-18015488)
chr3 (5-111)||(18015555-18015661)
chr3 (146-259)||(18115242-18115355)
chr3 (146-259)||(18164439-18164552)
chr3 (8-108)||(16676665-16676765)
chr3 (4-119)||(19413643-19413758)
chr3 (5-98)||(18143710-18143803)
chr3 (146-259)||(19333274-19333387)
chr3 (5-107)||(17728125-17728227)
chr3 (5-107)||(19029354-19029456)
chr3 (147-259)||(18143578-18143690)
chr3 (146-257)||(16676486-16676597)
chr3 (133-259)||(19374971-19375097)
chr3 (132-259)||(19380179-19380306)
chr3 (145-258)||(17728289-17728402)
chr3 (145-258)||(19029518-19029631)
chr3 (145-259)||(19354137-19354251)
chr3 (194-259)||(18022155-18022220)
chr3 (146-259)||(19419269-19419382)
chr3 (147-249)||(18107736-18107838)
chr3 (66-107)||(19424042-19424083)
[»] chr8 (1 HSPs)
chr8 (5-251)||(8458791-8459040)
[»] scaffold0640 (1 HSPs)
scaffold0640 (5-258)||(4699-4955)
[»] scaffold2156 (1 HSPs)
scaffold2156 (5-258)||(375-631)
[»] chr4 (1 HSPs)
chr4 (10-259)||(15531661-15531913)
[»] chr6 (2 HSPs)
chr6 (5-111)||(13667319-13667425)
chr6 (146-259)||(13667490-13667603)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 19399276 - 19399021
Alignment:
Q  4 attgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19399276 attgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctca 19399177  T
Q  104 cctttcaacatataattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19399176 cctttcaacatataattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacg 19399077  T
Q  204 ttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19399076 ttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 19399021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 17941299 - 17941043
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  17941299 ttgtgttgaatggatggaattcttatcacatcaaatttattatcactcaaatccaaataactgagaaactcaagttcaagaatacaaagattcatctcac 17941200  T
Q  105 ctttcaacatat---aattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    ||| |||   ||   | || ||| |||   ||||||||||||| ||||| |||||||||  ||||||||||||||| |||||||| ||||||||||||||    
T  17941199 cttccaaataattggagttgagatcaacttttgtaactctgtttgtaatattgtcacaaaggactccttcccaagcacaacaatcatttttggttgacca 17941100  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctc 258  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  17941099 cgttgatattcgaccaagactatcattgatgccatgtttgaaggttaatagtgtctc 17941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 19436436 - 19436178
Alignment:
Q  4 attgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctca 103  Q
    ||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  19436436 attgtgttgaatggatgaaattcttatcacatcaaaatcattcacactcaaatccaagtaactaagaaactcaagttttagaatacaaagattcatctca 19436337  T
Q  104 cctttcaacatataat---taagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacc 200  Q
    |||| |||   ||  |   | | | ||||  ||||||||||    |||||||||||||| | ||| |||  |||||| ||||||||||||| ||||||||    
T  19436336 ccttccaattgattgtagctgatatcaagttttgtaactcttccggtaatgttgtcacagtggacacctctccaagcacaacaatctttttcggttgacc 19436237  T
Q  201 acgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  19436236 acgttgatatccgaccaaaactatcattgatgccttgtttgaaggttaacagtgtctct 19436178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 19392688 - 19392435
Alignment:
Q  9 gttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcaccttt 108  Q
    ||||||||| ||||||||||||||| | ||| |||||| | ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||     
T  19392688 gttgaatggctggaattcttatcacgtcaaaatcattcccgctcaaatccaagtaacttagaaactcaagttgtagaatacaaagattcatctcaccttc 19392589  T
Q  109 caacatataat---taagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgtt 205  Q
    ||| | |||||   | ||| ||||  ||||||||||    ||| |||||||||||| ||| ||||||||||| |||||||||||||| |||| |||| ||    
T  19392588 caaaaaataatcgttgagatcaagttttgtaactcttcaggtagtgttgtcacaatggacaccttcccaagcacaacaatctttttttgttgtccacatt 19392489  T
Q  206 gatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  19392488 gatatccgaccaagattataattgatgccttgtttgaaggttaacagtgtctct 19392435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 18146386 - 18146129
Alignment:
Q  4 attgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctca 103  Q
    ||||||||||||||||||||||||||||| || ||| | ||| |||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  18146386 attgtgttgaatggatggaattcttatcatatcaaaataattatcactcaaatccaagtaattaagaaactcaagttcaagaatacaaagattcatctca 18146287  T
Q  104 cctttcaa---catataattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacc 200  Q
    |||| |||     | || || ||| ||||  ||||||||||||| ||||| |||||||||  |||||||| |||| | |||||||||||||  |||||||    
T  18146286 ccttccaattgattgtagttgagatcaagttttgtaactctgtttgtaatattgtcacaaaggactcctttccaaacacaacaatctttttcagttgacc 18146187  T
Q  201 acgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctc 258  Q
    ||||||| |||||||||| ||||||||||||||| | ||||||| || ||||||||||    
T  18146186 acgttgaaatccgaccaaaactatcattgatgccctttttgaaggttgacagtgtctc 18146129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 18102997 - 18102741
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||||||||||||||||||||||| ||| | ||||   ||||||||||||||| |||||||||||||| | |||||||| |||||||| ||||    
T  18102997 ttgtgttgaatggatggaattcttatcacatcaaaatgattccagctcaaatccaagtaattgagaaactcaagtccaagaatacaaagattcatatcac 18102898  T
Q  105 ctttcaacatataat---taagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    ||| ||    ||  |   |||||  ||    ||| |||||    |||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||    
T  18102897 cttccatgtgattgtagataagattaatttctgttactctcccggtaatgttgtcacagtggactccttcccaagcacaaaaatcttttttggttgacca 18102798  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctc 258  Q
    |||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  18102797 cgttgaaatccgaccaaaactatcattgatgccatgtttgaaggttaacagtgtctc 18102741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 19461087 - 19460984
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19461087 ttgtgttgaatggatggaaatcttatcacatcaaattcattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 19460988  T
Q  105 cttt 108  Q
    ||||    
T  19460987 cttt 19460984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 19350959 - 19350707
Alignment:
Q  10 ttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcacctttc 109  Q
    |||||||||||||||  ||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  19350959 ttgaatggatggaatagttatcacatcaaaatgattctcactcaaacccaagtaactgagaaactcaagttctagaatacaaagattcatctcaccttcc 19350860  T
Q  110 aacata---taattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttg 206  Q
    ||   |   ||  | ||| ||||  ||||||||||   |||||| ||||| || | |||||| |||||  | |||| ||||||||   ||||||| ||||    
T  19350859 aattgatcgtagctgagatcaagttttgtaactcttccagtaatattgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttg 19350760  T
Q  207 atatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
    |||||| ||||| | ||||||||||||| ||||| ||| |||||| |||||||    
T  19350759 atatccaaccaaaattatcattgatgccatgtttaaaggttaacaatgtctct 19350707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 14896835 - 14897081
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||| ||  |||||| |||||||||| ||| | ||||  ||||||||| ||||||||||||||||| ||||| |||||||| ||| |||||||||    
T  14896835 ttgtgttgagtgactggaatacttatcacatcaaaatgattcatactcaaatctaagtaactgagaaactccagttcgagaatacaaagactcatctcac 14896934  T
Q  105 ctttcaa--catataatta-agaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    |||||||  | |  || |  ||| ||||  |||||||||| | |||| ||||||| || | ||||||||||||||| ||||||||||||| ||   ||||    
T  14896935 ctttcaaatctttcaagtggagatcaagttttgtaactctttcagtagtgttgtcgcagtggactccttcccaagcacaacaatctttttcgg---acca 14897031  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaaca 251  Q
      ||||||||||||||| | |||||| |||||||||||||||||||||||    
T  14897032 tattgatatccgaccaaaagtatcatggatgccttgtttgaagtttaaca 14897081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 18115520 - 18115414
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18115520 ttgtgttgaatggatggaaatcttatcacatcaaaatcatttgagctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 18115421  T
Q  105 ctttcaa 111  Q
    |||||||    
T  18115420 ctttcaa 18115414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 19333552 - 19333446
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    |||||| |||||||||||||| ||||||| | |||| |||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19333552 ttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 19333453  T
Q  105 ctttcaa 111  Q
    |||||||    
T  19333452 ctttcaa 19333446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 19375249 - 19375143
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    |||||||||||||| |||||||||||||| | |||||||||   |||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  19375249 ttgtgttgaatggacggaattcttatcacgtcaaattcattgaaactcaaatccaagtaactgagaaactcaagttctagaatataaagattcatctcac 19375150  T
Q  105 ctttcaa 111  Q
    |||||||    
T  19375149 ctttcaa 19375143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 18022363 - 18022257
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||| ||||| |||||||||||||| |||||||| ||||||| |||||    
T  18022363 ttgtgttgaatagatggaattcttatcacatcaaattcattatgactcaaatccaaataactaagaaactcaagttcaagaatacaaagattcagctcac 18022264  T
Q  105 ctttcaa 111  Q
    |||||||    
T  18022263 ctttcaa 18022257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 18164717 - 18164611
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||| |||| |||||||||||||| ||| |||||   |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  18164717 ttgtgttgaattgatgtaattcttatcacatcaaaatcattaagactcaaatccaagtgactgagaaactcaagttctagaatacaaagattcatctcac 18164618  T
Q  105 ctttcaa 111  Q
    |||||||    
T  18164617 ctttcaa 18164611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 19419550 - 19419448
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||| |||||||||||||| | |||||| |||||||||||||    
T  19419550 ttgtgttgaatggatggaattcttatcacattaaatttattatgactcaaatccaagtaactaagaaactcaagttcaaaaatacaaagattcatctcac 19419451  T
Q  105 ctt 107  Q
    |||    
T  19419450 ctt 19419448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 19380457 - 19380358
Alignment:
Q  8 tgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcacctt 107  Q
    |||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||    
T  19380457 tgttgaatggatggaattcttatcacatcaaaattattttcactcaaatccaagtaactaagaaacttaagttcaagaatacaaagattcatctcacctt 19380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 19413589 - 19413476
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    ||||||||||| || | ||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||| |||| || || ||||||     
T  19413589 gtaatgttgtcgcagtggactccttcccaaccacaacaatctttttcggttgaccacgttgatatccaaccaagactatcagtgataccctggttgaagg 19413490  T
Q  246 ttaacagtgtctct 259  Q
    ||||||||||||||    
T  19413489 ttaacagtgtctct 19413476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 25462605 - 25462352
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    |||||||||| || |||||| ||||| |  | ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  25462605 ttgtgttgaaaggctggaatacttatgatgttaaattcattatcacttaaatccaagtaactgagaaactcaagttctagaacacatagattcatctcac 25462506  T
Q  105 ctttcaa---catataattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    ||| |||     | || |  ||| ||||  |||||||||     ||||||||||||||   ||| |||||||| || |||||||||||||     |||||    
T  25462505 cttccaattgactgtagtggagatcaagttttgtaactcgtccggtaatgttgtcacagacgacaccttcccatgcacaacaatcttttt---cagacca 25462409  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctc 258  Q
    | |||| |||  ||||||||| ||||||||||| ||||||||| |||||||||||||    
T  25462408 cattgaaatcataccaagactgtcattgatgccatgtttgaaggttaacagtgtctc 25462352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 18108008 - 18107901
Alignment:
Q  4 attgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctca 103  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||   |||||||| || ||||||||||||||||| || |||||||| ||||||||||||    
T  18108008 attgtgttgaatggatggaattcttatgacatcaaaatcattccagctcaaatctaaataactgagaaactcaaggtcaagaatacaaagattcatctca 18107909  T
Q  104 cctttcaa 111  Q
    ||||||||    
T  18107908 cctttcaa 18107901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 19460936 - 19460809
Alignment:
Q  132 ttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgat 231  Q
    ||||||||||   ||||||||||||||| | ||||||||||||||| ||||||||| ||| ||||||||| ||| |||||||||||||| | ||||||||    
T  19460936 ttgtaactcttccagtaatgttgtcacagtggactccttcccaagcacaacaatctatttcggttgaccatgttaatatccgaccaagagtgtcattgat 19460837  T
Q  232 gccttgtttgaagtttaacagtgtctct 259  Q
     |||| ||||||| |||| |||||||||    
T  19460836 tccttatttgaaggttaagagtgtctct 19460809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 24493863 - 24494120
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    |||| |||||||| |||||| ||||||| || ||| || || || ||||| ||||||||||| ||||||||||||||||| | | | |  |  |||||||    
T  24493863 ttgttttgaatggttggaatacttatcaaatcaaaatcgttatcgctcaagtccaagtaactaagaaactcaagttctaggaaagaaaagtcgatctcac 24493962  T
Q  105 ctttcaa---catataattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    |||||||   |  || | ||||| | |    ||||||||||  ||||||||||||||| | |||||||| ||| || ||||||||||||  |||||||||    
T  24493963 ctttcaaatactgatcactaagatcgatctatgtaactctgccagtaatgttgtcacattggactcctttccatgcacaacaatcttttacggttgacca 24494062  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
     ||||| ||| ||||||||||||||| ||||| ||||||||||  |||||||||||||    
T  24494063 tgttgaaatcagaccaagactatcatcgatgctttgtttgaaggctaacagtgtctct 24494120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 18015488 - 18015374
Alignment:
Q  145 agtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaag 244  Q
    ||||||||||||||| | ||||||||||||||  |||||||||||||  || ||||||||||| |||  ||||| |||||||||||| ||||||||||||    
T  18015488 agtaatgttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttgaaatcataccaaaactatcattgattccttgtttgaag 18015389  T
Q  245 tttaacagtgtctct 259  Q
     ||||||||||||||    
T  18015388 gttaacagtgtctct 18015374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 18015661 - 18015555
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    |||| ||||||||||||||| |||||||||| |||||||||   |||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||    
T  18015661 ttgttttgaatggatggaatacttatcacatcaaattcattgaaactcaaatccaagtaactaagaaattcaagttctaaaatacaaaaattcatctcac 18015562  T
Q  105 ctttcaa 111  Q
    |||||||    
T  18015561 ctttcaa 18015555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 18115355 - 18115242
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    |||||||| ||||| | ||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||| | |||||||| |||| |||||||     
T  18115355 gtaatgttctcacagtggactccttcccaagcacaacaatctatttcggttgaccacgttaatatccgaccaagagtgtcattgattccttttttgaagg 18115256  T
Q  246 ttaacagtgtctct 259  Q
    |||| |||||||||    
T  18115255 ttaagagtgtctct 18115242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 18164552 - 18164439
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    ||||||||||| || | ||||||||||||  | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||      
T  18164552 gtaatgttgtcgcagtggactccttcccatacacaacaatctttttcggttgaccacgttgatatccgaccaaaactatcattgatgccgtgtctgaacg 18164453  T
Q  246 ttaacagtgtctct 259  Q
    |||||| |||||||    
T  18164452 ttaacaatgtctct 18164439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 16676765 - 16676665
Alignment:
Q  8 tgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcacctt 107  Q
    ||||||||||||||||||||||| |  | ||||||||||   ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||    
T  16676765 tgttgaatggatggaattcttattaggtcaaattcattccagctcaaatccaagtaaattagaaactcaagttctagaatacaaagattcatctcacctt 16676666  T
Q  108 t 108  Q
    |    
T  16676665 t 16676665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 19413758 - 19413643
Alignment:
Q  4 attgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctca 103  Q
    |||||||| ||| | ||||||||||||| ||  ||| | ||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  19413758 attgtgtttaatagttggaattcttatctcaccaaaataattgtggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcc 19413659  T
Q  104 cctttcaacatataat 119  Q
    |||||||||| |||||    
T  19413658 cctttcaacaaataat 19413643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 18143803 - 18143710
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattca 98  Q
    |||||||||||||||||||||||||||| || ||| |||||    ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  18143803 ttgtgttgaatggatggaattcttatcatatcaaaatcattgaatctcaaatccaagtaactaagaaactcaagttctagaatacaaagattca 18143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 19333387 - 19333274
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    ||||||||||| ||   ||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||| ||||      
T  19333387 gtaatgttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgatatccgaccaagactatcatggatgccctgtctgaacg 19333288  T
Q  246 ttaacagtgtctct 259  Q
    |||||| |||||||    
T  19333287 ttaacaatgtctct 19333274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17728125 - 17728227
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||| ||||||||||||||||||||  ||| ||||| |||    ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  17728125 ttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcac 17728224  T
Q  105 ctt 107  Q
    |||    
T  17728225 ctt 17728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 19029354 - 19029456
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||| ||||||||||||||||||||  ||| ||||| |||    ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  19029354 ttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcac 19029453  T
Q  105 ctt 107  Q
    |||    
T  19029454 ctt 19029456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 18143690 - 18143578
Alignment:
Q  147 taatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagtt 246  Q
    |||||||||| || ||||||||||||||  ||||||||| |||||  |||||||| ||||||||  ||||||||||||||||||||||   ||||||| |    
T  18143690 taatgttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgatatttgaccaagactatcattgatgccccatttgaagct 18143591  T
Q  247 taacagtgtctct 259  Q
    ||||| |||||||    
T  18143590 taacaatgtctct 18143578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 16676597 - 16676486
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    ||||||||||| || | ||||||||||||  | ||||| |||||||  |||||||| ||||||||||||| || |||| ||||||||||||||||||||     
T  16676597 gtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaagg 16676498  T
Q  246 ttaacagtgtct 257  Q
    |||||| |||||    
T  16676497 ttaacaatgtct 16676486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 19375097 - 19374971
Alignment:
Q  133 tgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatg 232  Q
    |||||||||  |||||||||||||||| ||||||||||||||||  |||||||||||||   | ||||||| ||| |||  ||||| ||||||||||||     
T  19375097 tgtaactctactagtaatgttgtcacagtagactccttcccaagaacaacaatctttttcaatcgaccacgatgaaatcataccaaaactatcattgatt 19374998  T
Q  233 ccttgtttgaagtttaacagtgtctct 259  Q
    || | ||||||| |||| |||||||||    
T  19374997 ccctctttgaaggttaatagtgtctct 19374971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 19380306 - 19380179
Alignment:
Q  132 ttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgat 231  Q
    ||||||||||  | |||||||||||||| | ||| |||| |||||| |||||||| ||||  |||||||||||||| |||  ||||||||||||||||||    
T  19380306 ttgtaactcttctggtaatgttgtcacagtggacacctttccaagcacaacaatcattttcagttgaccacgttgaaatcgtaccaagactatcattgat 19380207  T
Q  232 gccttgtttgaagtttaacagtgtctct 259  Q
     || ||||| ||| |||| ||| |||||    
T  19380206 tccctgtttaaaggttaagagtatctct 19380179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 17728289 - 17728402
Alignment:
Q  145 agtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaag 244  Q
    ||||||||||||||| | ||| ||||||||||| ||||||| || ||  ||| |||||| |||||||||| ||   ||| |||||||||||||||||||     
T  17728289 agtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaaccacgatgatatccgaacagagctagcattgatgccttgtttgaaa 17728388  T
Q  245 tttaacagtgtctc 258  Q
     |||||||||||||    
T  17728389 gttaacagtgtctc 17728402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 19029518 - 19029631
Alignment:
Q  145 agtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaag 244  Q
    ||||||||||||||| | ||| ||||||||||| ||||||| || ||  ||| |||||| |||||||||| ||   ||| |||||||||||||||||||     
T  19029518 agtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaaccacgatgatatccgaacagagctagcattgatgccttgtttgaaa 19029617  T
Q  245 tttaacagtgtctc 258  Q
     |||||||||||||    
T  19029618 gttaacagtgtctc 19029631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 19354251 - 19354137
Alignment:
Q  145 agtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaag 244  Q
    |||||| |||||||| | |||| |||||||||  |||||||||||||  || |||||| |||| |||  |||||||||||||||||| || ||||| |||    
T  19354251 agtaatattgtcacagtggacttcttcccaagaacaacaatctttttcagtcgaccacattgaaatcataccaagactatcattgattccctgtttaaag 19354152  T
Q  245 tttaacagtgtctct 259  Q
     |||||| |||||||    
T  19354151 gttaacaatgtctct 19354137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 18022220 - 18022155
Alignment:
Q  194 gttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
    ||||||||| |||||||||||| ||||||||||||||| ||  |||| |||||||| |||||||||    
T  18022220 gttgaccactttgatatccgactaagactatcattgattccacgtttaaagtttaagagtgtctct 18022155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 19419382 - 19419269
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    |||||||||||||| | ||||||||||||  | |||||||||||||  | ||||||| |||| | | | | |||||||| ||||||||| |||||||||     
T  19419382 gtaatgttgtcacagtggactccttcccatacacaacaatctttttctgctgaccaccttgaaaacaggctaagactattattgatgccctgtttgaagg 19419283  T
Q  246 ttaacagtgtctct 259  Q
    |||| ||| |||||    
T  19419282 ttaagagtatctct 19419269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 18107838 - 18107736
Alignment:
Q  147 taatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagtt 246  Q
    ||||||||||||| | |||| |||||||  | ||||||||||||| |||||||||| |||| | |   | |||||||| ||||||||| ||||||||| |    
T  18107838 taatgttgtcacagtggacttcttcccatacacaacaatctttttcggttgaccaccttgaaaacatgctaagactattattgatgccatgtttgaaggt 18107739  T
Q  247 taa 249  Q
    |||    
T  18107738 taa 18107736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 19424083 - 19424042
Alignment:
Q  66 tgagaaactcaagttctagaatacagagattcatctcacctt 107  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  19424083 tgagaaactcaagttcgagaatacaaagattgatctcacctt 19424042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 8459040 - 8458791
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||||| ||||||||||||||||||| ||||| ||     ||||||||||||||||| ||||||||||||||||||||  | ||||| |||| ||    
T  8459040 ttgtgttgaatcgatggaattcttatcacatcaaatttatgtaagctcaaatccaagtaactcagaaactcaagttctagaatggaaagattgatcttac 8458941  T
Q  105 ctttcaacatataatta---agaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    ||| ||| | | ||||    ||| ||||  |||||||||||  ||||||| ||||||| | |||||||| ||| || |||||||||||||  ||||||||    
T  8458940 cttccaaaaaacaattgttgagatcaagttttgtaactctgccagtaatgctgtcacagtggactcctttccacgcacaacaatctttttcagttgacca 8458841  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaaca 251  Q
    |||||||||   |||| |||||||||||| ||| ||||||||| ||||||    
T  8458840 cgttgatattataccacgactatcattgaggccctgtttgaaggttaaca 8458791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 4955 - 4699
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||| ||  ||||| |||||| || | ||| ||||| |  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  4955 ttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttctagaatacaaagattcatctcac 4856  T
Q  105 ctttcaacatat---aattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    ||| |||  | |   | |  | | ||||  |||| ||| |||| || ||  | ||||| |||||||||||||| || ||||||||||||| |||||||||    
T  4855 cttccaattttttgaactgcatatcaagttttgttactttgttggtgatactatcacagtagactccttcccatgcacaacaatctttttcggttgacca 4756  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctc 258  Q
    ||||||||||| ||||||||||||||||||| | ||||||||| |||||| ||||||    
T  4755 cgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctc 4699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 375 - 631
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    ||||||||| ||  ||||| |||||| || | ||| ||||| |  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  375 ttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttctagaatacaaagattcatctcac 474  T
Q  105 ctttcaac-atataa--ttaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgacca 201  Q
    ||| |||  || | |  |  | | ||||  |||| ||| |||| || ||  | ||||| |||||||||||||| || ||||||||||||| |||||||||    
T  475 cttccaattatttgaactgcatatcaagttttgttactttgttggtgatactatcacagtagactccttcccatgcacaacaatctttttcggttgacca 574  T
Q  202 cgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctc 258  Q
    ||||||||||| ||||||||||||||||||| | ||||||||| |||||| ||||||    
T  575 cgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctc 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 15531913 - 15531661
Alignment:
Q  10 ttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcacctttc 109  Q
    ||||||||||||||| |||| ||||| ||| ||||||  ||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||| |    
T  15531913 ttgaatggatggaatgcttagcacatcaaaatcattccgactcaaatcgaagtaactaagaaactcaagttttagaatacaaagattcatctcaccttcc 15531814  T
Q  110 aa---catataattaagaacaaggcttgtaactctgttagtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttg 206  Q
    ||     | ||  | ||  ||||  ||||||||||    || ||||||||||||| ||||||| ||||||| ||||||| |||||   | |||||| |||    
T  15531813 aattgattgtagctgaggtcaagttttgtaactcttccggtcatgttgtcacaatggactcctccccaagcacaacaatttttttcaatagaccacattg 15531714  T
Q  207 atatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctct 259  Q
    | |||||||||| |||||||||||  || ||||||||| ||||||||||||||    
T  15531713 aaatccgaccaaaactatcattgacaccctgtttgaaggttaacagtgtctct 15531661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 13667319 - 13667425
Alignment:
Q  5 ttgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac 104  Q
    |||||||||||||||| |||| ||||||||| ||||||||| | |||||||||||| || |||||||||| ||||||||||||||| |||||||||| ||    
T  13667319 ttgtgttgaatggatgaaatttttatcacatcaaattcattatgactcaaatccaaatagctgagaaacttaagttctagaatacaaagattcatcttac 13667418  T
Q  105 ctttcaa 111  Q
    |||||||    
T  13667419 ctttcaa 13667425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 13667490 - 13667603
Alignment:
Q  146 gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt 245  Q
    |||||||||||||| | ||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||| | |||||||  || |||||||||     
T  13667490 gtaatgttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgatatccgaccaagagtgtcattgactccctgtttgaagg 13667589  T
Q  246 ttaacagtgtctct 259  Q
    |||| |||||||||    
T  13667590 ttaagagtgtctct 13667603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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