View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1359_low_5 (Length: 620)

Name: NF1359_low_5
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1359_low_5
NF1359_low_5
[»] chr7 (2 HSPs)
chr7 (245-612)||(46232265-46232634)
chr7 (1-211)||(46232054-46232264)
[»] chr4 (5 HSPs)
chr4 (352-413)||(13029008-13029069)
chr4 (359-410)||(22087635-22087686)
chr4 (359-413)||(13035679-13035733)
chr4 (352-413)||(47551901-47551962)
chr4 (5-52)||(37804561-37804608)
[»] chr2 (1 HSPs)
chr2 (352-413)||(42071556-42071617)
[»] chr8 (3 HSPs)
chr8 (359-413)||(1336309-1336363)
chr8 (360-415)||(42163874-42163929)
chr8 (364-413)||(14539407-14539456)
[»] chr3 (5 HSPs)
chr3 (360-413)||(10480586-10480639)
chr3 (352-410)||(35864082-35864140)
chr3 (359-413)||(44441807-44441861)
chr3 (356-410)||(1902019-1902073)
chr3 (356-410)||(1911465-1911519)
[»] chr6 (2 HSPs)
chr6 (359-413)||(33106721-33106775)
chr6 (352-410)||(11769767-11769825)
[»] chr5 (1 HSPs)
chr5 (359-413)||(4930807-4930861)
[»] chr1 (7 HSPs)
chr1 (359-413)||(37245074-37245128)
chr1 (362-413)||(19967223-19967274)
chr1 (358-413)||(30282552-30282607)
chr1 (359-413)||(46396458-46396512)
chr1 (352-413)||(1282385-1282445)
chr1 (352-413)||(1283416-1283476)
chr1 (362-410)||(21487318-21487366)
[»] scaffold0245 (1 HSPs)
scaffold0245 (352-413)||(8065-8125)
[»] scaffold0229 (1 HSPs)
scaffold0229 (352-413)||(8393-8453)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 245 - 612
Target Start/End: Original strand, 46232265 - 46232634
Alignment:
Q  245 gcgatttcataagttcttcaaaccattgagttgctgacgggg--acagatgttgttctatgtgtaggcctatgcccacacaaaattttagaaacnnnnnn 342  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||          
T  46232265 gcgatttcataagttcttcaaaccattgagttgctgacggggggacagatgttgttctatgtgtaggtctatgcccacacaaaattttagaaactttttt 46232364  T
Q  343 nnnagtagtatgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctttgctgtggtagataactccaaaaccaaat 442  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46232365 tttagtagtatgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctttgctgtggtagataactccaaaaccaaat 46232464  T
Q  443 acacaaaaggaagcatacacaatagatattttggtttccctaagcatcataacaagatcactaatcctaagttccttgggttgtttgaactgggactgtg 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46232465 acacaaaaggaagcatacacaatagatattttggtttccctaagcatcataacaagatcactaatcctaagttccttgggttgtttgaactgggactgtg 46232564  T
Q  543 ctcagtctcaagcgctgcttgtaccttctgaagcaaaagagcttcactttcaaagaatgcaccacgttct 612  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46232565 ctcagtctcaagcgctgcttgtaccttccgaagcaaaagagcttcactttcaaagaatgcaccacgttct 46232634  T

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Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 46232054 - 46232264
Alignment:
Q  1 ttcctgctaaaacagaatggattgaccctcttatggaagttgatattggtgattttatccacaggttctgctcttttttggatgttgtgaaagcaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  46232054 ttcctgctaaaacagaatggattgaccctcttatggaagttgatattggtgattttatccacagttgctgctcttttttggatgttgtgaaagcaaatag 46232153  T
Q  101 ttcaactattttaaagtataaaacattcattctaattgttcttagatcttatctttcttattttgaaaatattgaacgatgctcctatttttcaaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46232154 ttcaactattttaaagtataaaacattcattctaattgttcttagatcttatctttcttattttgaaaatattgaacgatgctcctatttttcaaaatta 46232253  T
Q  201 tatacaaccat 211  Q
    |||||||||||    
T  46232254 tatacaaccat 46232264  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 13029069 - 13029008
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  13029069 atgtacgaatagttgacattttgaccacatgatccacacttatcacaaatcatttatctctt 13029008  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 22087635 - 22087686
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctct 410  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  22087635 aatagttgacattttgaccacatgacccacacttatcacatatcatttctct 22087686  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 13035733 - 13035679
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  13035733 aatagttgacattttgaccacaagacccacacttatcacaaatcatttatctctt 13035679  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 47551901 - 47551962
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||||||||||||| ||||    
T  47551901 atgtactaatagttgacattttaatcacatgaaccacacttatcacaaatcatttctttctt 47551962  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 37804561 - 37804608
Alignment:
Q  5 tgctaaaacagaatggattgaccctcttatggaagttgatattggtga 52  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  37804561 tgctgaaacagaatggattgaacctcttatgaaagttgatattggtga 37804608  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 42071617 - 42071556
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||||||||    
T  42071617 atgtactaatagttggcattttgatcacatgatccacacttatcacaaatcatttctctctt 42071556  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 1336363 - 1336309
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||||||||  |||||| |||||||||||||||| ||||||||||||    
T  1336363 aatagttgacattttgatcacatgaaccacacttatcacaaaacatttctctctt 1336309  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 42163874 - 42163929
Alignment:
Q  360 atagttgacattttgactacatgacccacacttatcacaaatcatttctctctttg 415  Q
    ||||||||||||||||| |||||||  ||| || ||||||||||||||||||||||    
T  42163874 atagttgacattttgaccacatgacttacatttctcacaaatcatttctctctttg 42163929  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 14539407 - 14539456
Alignment:
Q  364 ttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||| | ||||||  ||||||||| |||||||||||||||||||    
T  14539407 ttgacattttaattacatggtccacacttaacacaaatcatttctctctt 14539456  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 10480639 - 10480586
Alignment:
Q  360 atagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||    
T  10480639 atagttgacattttgaccacatgatccacacttatcacatatcatttttctctt 10480586  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 35864082 - 35864140
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctct 410  Q
    |||||||||||||||| ||||| || ||||  ||| |||||||||||||||||||||||    
T  35864082 atgtactaatagttgatatttttaccacattgccctcacttatcacaaatcatttctct 35864140  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 44441861 - 44441807
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||||||||  |||||   ||||||||||||||||||||||||||||    
T  44441861 aatagttgacattttgatcacatggatcacacttatcacaaatcatttctctctt 44441807  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 1902019 - 1902073
Alignment:
Q  356 actaatagttgacattttgactacatgacccacacttatcacaaatcatttctct 410  Q
    |||||||||||| |||||||  ||||| ||| ||||||||| |||||||||||||    
T  1902019 actaatagttgatattttgatcacatggcccccacttatcataaatcatttctct 1902073  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 1911465 - 1911519
Alignment:
Q  356 actaatagttgacattttgactacatgacccacacttatcacaaatcatttctct 410  Q
    |||||||||||| |||||||  ||||| ||| ||||||||| |||||||||||||    
T  1911465 actaatagttgatattttgatcacatggcccccacttatcataaatcatttctct 1911519  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 33106721 - 33106775
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||||||||| | ||||  |||||||||||||||| |||||||||||    
T  33106721 aatagttgacattttgaccatatgattcacacttatcacaaattatttctctctt 33106775  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 11769767 - 11769825
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctct 410  Q
    ||||| |||||||| |||||||||  | ||| ||||||||| |||||||||||||||||    
T  11769767 atgtattaatagttaacattttgatcatatggcccacacttctcacaaatcatttctct 11769825  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 4930861 - 4930807
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||||||| |||||||| |||||||| |||||| ||||||||||||||| ||||    
T  4930861 aatagttgagattttgaccacatgacctacacttctcacaaatcatttctttctt 4930807  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 37245128 - 37245074
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||| ||||||||||||  |||||| |||||||||||| ||||||||||||||||    
T  37245128 aatatttgacattttgatcacatgatccacacttatcataaatcatttctctctt 37245074  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 19967223 - 19967274
Alignment:
Q  362 agttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||| || ||||| | ||||||||||||||||||||| ||||||    
T  19967223 agttgacattttaaccacatggctcacacttatcacaaatcatttatctctt 19967274  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 30282607 - 30282552
Alignment:
Q  358 taatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||| |||||||||| ||||||||||| ||| ||| | ||||||||||||    
T  30282607 taatagttgatattttgactaaatgacccacacctataacacaacatttctctctt 30282552  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 46396458 - 46396512
Alignment:
Q  359 aatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    |||||||||||||||||  |||||   ||||||||||| ||||||||||||||||    
T  46396458 aatagttgacattttgatcacatggatcacacttatcagaaatcatttctctctt 46396512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 1282445 - 1282385
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||| ||||||||||||||| ||  ||||||  ||||||||||||||||||||||| ||||    
T  1282445 atgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatctt 1282385  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 1283476 - 1283416
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||| ||||||||||||||| ||  ||||||  ||||||||||||||||||||||| ||||    
T  1283476 atgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatctt 1283416  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 21487318 - 21487366
Alignment:
Q  362 agttgacattttgactacatgacccacacttatcacaaatcatttctct 410  Q
    |||||| |||||||| |||||  |||||||| |||||||||||||||||    
T  21487318 agttgatattttgaccacatggtccacacttctcacaaatcatttctct 21487366  T

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Target: scaffold0245 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 8125 - 8065
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||| ||||||||||||||| ||  ||||||  ||||||||||||||||||||||| ||||    
T  8125 atgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatctt 8065  T

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Target: scaffold0229 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 8453 - 8393
Alignment:
Q  352 atgtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 413  Q
    ||||| ||||||||||||||| ||  ||||||  ||||||||||||||||||||||| ||||    
T  8453 atgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatctt 8393  T

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