View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_51 (Length: 266)
Name: NF1359_low_51
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 35060312 - 35060090
Alignment:
| Q |
30 |
gggttatggtataggcccctttgacatgtcatttgcaggtggtctgcctcaagacccatttggcatgcaaggttacgtgatgcctgttcatccacctcat |
129 |
Q |
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| T |
35060312 |
gggttatggtataggcccctttgacatgtcatttgcaggtggtccgcctcaagacccatttggcatgcaaggttatgtgatgcctgttcatccacctcat |
35060213 |
T |
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| Q |
130 |
aggtattacgtcagcctttccccctgctgttgcatgtttgttcttatatgcatgtttaagaagtttgatagagttttaacttgcttgcaagtcaaatatt |
229 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060212 |
aggtatgacgtcagcctttccccctgctattgcatgtttgttcttatatgcatgtttaagaagtttgatagagttttaacttgcttgcaagtcaaatatt |
35060113 |
T |
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| Q |
230 |
tgcaccgctgtaaaatagcaaca |
252 |
Q |
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||||||||||||||||||||||| |
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| T |
35060112 |
tgcaccgctgtaaaatagcaaca |
35060090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 43021607 - 43021392
Alignment:
| Q |
33 |
ttatggtataggcccctttgacatgtcatttgcaggtggtctgcctcaagacccatttggcatgcaaggttacgtgatgcctgttcatccacctcatagg |
132 |
Q |
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| T |
43021607 |
ttatggtctaggcccctttgacatgccatttggaggtggtctgcctcaagacctatttggcatgcatggttacgtgatgcctgttcatccacctcatagg |
43021508 |
T |
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| Q |
133 |
tattacgtcagcctttccccctgctgttgcatgtttgttcttatatgcatgtttaagaagtttgatagagttttaacttgcttgcaagtcaaatatttgc |
232 |
Q |
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| T |
43021507 |
tatgacgtcagcctttacccttgctattgcatgttttttcttatatgcatgtttaagaagtttgatagagttttaac----ttgcaaatcaaatatttgc |
43021412 |
T |
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| Q |
233 |
accgctgtaaaatagcaaca |
252 |
Q |
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|||| ||||||||||||||| |
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| T |
43021411 |
accgttgtaaaatagcaaca |
43021392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 42811249 - 42811127
Alignment:
| Q |
30 |
gggttatggtataggcccctttgacatgtcatttgcaggtggtctgcctcaagacccatttggcatgcaaggttacgtgatgcctgttcatccacctcat |
129 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42811249 |
gggttatggtctaggcccctttgacatgccatttgcaggtggtctgcctcaagacccatttggcatgcatggttacgtgatgcctgttcatccacctcat |
42811150 |
T |
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| Q |
130 |
aggtattacgtcagcctttcccc |
152 |
Q |
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|||||| |||| ||||||||||| |
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| T |
42811149 |
aggtatgacgttagcctttcccc |
42811127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 42810680 - 42810598
Alignment:
| Q |
166 |
tttgttcttatatgcatgtttaagaagtttgatagagttttaacttgcttgcaagtcaaatatttgcaccgctgtaaaatagcaaca |
252 |
Q |
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| T |
42810680 |
tttgttcttatatgcatgtttaagcagtttgatagagttttaac----ttgcaagtcaaatatttgcaccgttgtaaaatagcaaca |
42810598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 41566467 - 41566507
Alignment:
| Q |
74 |
tgcctcaagacccatttggcatgcaaggttacgtgatgcct |
114 |
Q |
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||||||| |||||||||||||||||||||||| |||||||| |
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| T |
41566467 |
tgcctcacgacccatttggcatgcaaggttacatgatgcct |
41566507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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