View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_52 (Length: 264)
Name: NF1359_low_52
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 8723262 - 8723062
Alignment:
| Q |
20 |
gattatactgtattatttttgaaaaagagcattatatcaaggtttccatagtaccgtatcaacaccaaattatatttatagtnnnnnnnnnnnnnnnnnn |
119 |
Q |
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| T |
8723262 |
gattatactgtattatttttgaaaaagagcattatatcaaggtttccatagtaccgtatcaacaccgaattatatttatagtaaaaaaaaacaaaaaaa- |
8723164 |
T |
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| Q |
120 |
nncacttaattatatatatgattttcaaaaatttctttgttgagttgatagtgtgtctaggttaataatttatatgtcgatgctcactttccaatgtcat |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8723163 |
--cacttaattatatatatgattttcaaaaatttatttgttgagtttatagtgtgtctaggttaataatttatacgtcgatgctcactttccaatgtcat |
8723066 |
T |
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| Q |
220 |
gttt |
223 |
Q |
| |
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|||| |
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| T |
8723065 |
gttt |
8723062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 23436323 - 23436421
Alignment:
| Q |
122 |
cacttaattatatatatgattttcaaaaatttctttgttgagttgatagtgtgtctaggttaataatttatatgtcgatgctcactttccaatgtcatg |
220 |
Q |
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|||| |||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23436323 |
cactgaattatatttatgattttcagaaatttatttgttgagtttatagtgtgtctaggttaataatttatatgtcgatgctcactttcctatgtcatg |
23436421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 23436244 - 23436304
Alignment:
| Q |
41 |
aaaaagagcattatatcaaggtttccatagtaccgtatcaacaccaaattatatttatagt |
101 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
23436244 |
aaaaggagcattatattaaggtttccatagtaccgtatcaagaccgaattatatttatagt |
23436304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 21237835 - 21237886
Alignment:
| Q |
169 |
agtgtgtctaggttaataatttatatgtcgatgctcactttccaatgtcatg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21237835 |
agtgtgtctaggttaataatttatatgtcgatgctcattttccaatgtcatg |
21237886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 21237687 - 21237747
Alignment:
| Q |
41 |
aaaaagagcattatatcaaggtttccatagtaccgtatcaacaccaaattatatttatagt |
101 |
Q |
| |
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|||| ||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
21237687 |
aaaaggagcattatattaagattttcatagtaccgtatcaacaccgaattatatttatagt |
21237747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 21237756 - 21237820
Alignment:
| Q |
122 |
cacttaattatatatatgattttcaaaaatttc----tttgttgagttgatagtgtgtctaggtt |
182 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
21237756 |
cacttaattatatttatgattttcaaaaatttaattatttgttgagtttatagtgtgtctaggtt |
21237820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 21237634 - 21237670
Alignment:
| Q |
20 |
gattatactgtattatttttgaaaaagagcattatat |
56 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |
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| T |
21237634 |
gattatattgtattatttttgaaaaggagcattatat |
21237670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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