View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1359_low_58 (Length: 253)
Name: NF1359_low_58
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 21260032 - 21260183
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21260032 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
21260131 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21260132 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 21264613 - 21264764
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21264613 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
21264712 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21264713 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 6847756 - 6847908
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6847756 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
6847855 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgacaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
6847856 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaa |
6847908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6843153 - 6843296
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6843153 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactctt |
6843252 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6843253 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 47805185 - 47805337
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47805185 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
47805284 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgacaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
47805285 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaa |
47805337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 47800603 - 47800746
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47800603 |
atcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
47800702 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47800703 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 29269788 - 29269829
Alignment:
| Q |
201 |
acaagagccataaagtgttgttgctgctacacaggttctgct |
242 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
29269788 |
acaagagccatacagtgttgttgctgctacacaagttctgct |
29269829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 31289581 - 31289542
Alignment:
| Q |
201 |
acaagagccataaagtgttgttgctgctacacaggttctg |
240 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31289581 |
acaagagccatacagtgttgtttctgctacacaggttctg |
31289542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 26853986 - 26853949
Alignment:
| Q |
201 |
acaagagccataaagtgttgttgctgctacacaggttc |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26853986 |
acaagagccatacagtgttgttgctgctacacaagttc |
26853949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University