View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1359_low_65 (Length: 250)

Name: NF1359_low_65
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1359_low_65
NF1359_low_65
[»] chr7 (30 HSPs)
chr7 (14-250)||(42805302-42805538)
chr7 (77-232)||(42762919-42763070)
chr7 (14-75)||(32758214-32758275)
chr7 (14-74)||(21172128-21172188)
chr7 (14-74)||(42798623-42798683)
chr7 (14-76)||(48735242-48735304)
chr7 (14-74)||(7193039-7193099)
chr7 (20-76)||(35334941-35334997)
chr7 (14-74)||(46354148-46354208)
chr7 (14-74)||(47077974-47078034)
chr7 (14-73)||(18326989-18327048)
chr7 (14-75)||(2541140-2541202)
chr7 (14-76)||(42495956-42496018)
chr7 (19-71)||(29140486-29140538)
chr7 (20-75)||(42476826-42476881)
chr7 (14-56)||(11617709-11617751)
chr7 (20-74)||(21447544-21447598)
chr7 (21-78)||(12473254-12473311)
chr7 (21-74)||(43557426-43557479)
chr7 (21-73)||(5180285-5180337)
chr7 (14-74)||(47716413-47716473)
chr7 (14-69)||(7794627-7794682)
chr7 (23-74)||(22699100-22699151)
chr7 (36-71)||(25198679-25198714)
chr7 (34-76)||(34626348-34626390)
chr7 (14-68)||(40463837-40463891)
chr7 (14-67)||(10693192-10693245)
chr7 (29-70)||(14732958-14732999)
chr7 (14-75)||(28078252-28078313)
chr7 (20-56)||(1424037-1424073)
[»] chr8 (25 HSPs)
chr8 (14-75)||(28817747-28817808)
chr8 (14-75)||(36720749-36720810)
chr8 (14-74)||(35261633-35261693)
chr8 (21-74)||(7136657-7136710)
chr8 (14-75)||(30454216-30454277)
chr8 (14-74)||(12670369-12670429)
chr8 (14-74)||(24245405-24245465)
chr8 (14-76)||(25250474-25250536)
chr8 (14-76)||(39461117-39461179)
chr8 (14-75)||(13160655-13160716)
chr8 (14-74)||(20869617-20869677)
chr8 (14-74)||(29521806-29521866)
chr8 (14-74)||(44530103-44530163)
chr8 (14-65)||(28407379-28407430)
chr8 (14-76)||(2626471-2626533)
chr8 (14-75)||(17823529-17823590)
chr8 (14-74)||(26954086-26954146)
chr8 (14-74)||(45071219-45071279)
chr8 (14-76)||(6760775-6760836)
chr8 (34-76)||(23286434-23286476)
chr8 (14-75)||(18164880-18164941)
chr8 (34-75)||(40605046-40605087)
chr8 (14-70)||(20284194-20284250)
chr8 (14-70)||(21070823-21070879)
chr8 (21-53)||(40607852-40607884)
[»] chr5 (17 HSPs)
chr5 (14-79)||(41014268-41014333)
chr5 (14-75)||(37024675-37024736)
chr5 (14-74)||(24448844-24448904)
chr5 (14-74)||(35710267-35710327)
chr5 (14-71)||(4619227-4619284)
chr5 (14-75)||(38879534-38879595)
chr5 (14-75)||(22600407-22600468)
chr5 (14-75)||(23974734-23974794)
chr5 (14-71)||(43334159-43334216)
chr5 (22-74)||(1565385-1565437)
chr5 (14-71)||(27328709-27328766)
chr5 (14-74)||(8170103-8170163)
chr5 (34-69)||(31299591-31299626)
chr5 (36-74)||(19438703-19438741)
chr5 (29-73)||(2838733-2838777)
chr5 (15-75)||(22187238-22187298)
chr5 (36-76)||(41956884-41956924)
[»] chr4 (24 HSPs)
chr4 (14-74)||(13256518-13256578)
chr4 (14-74)||(47528649-47528709)
chr4 (14-74)||(21646918-21646978)
chr4 (14-76)||(48598944-48599006)
chr4 (14-75)||(5648212-5648273)
chr4 (14-75)||(6430746-6430807)
chr4 (14-78)||(5306784-5306848)
chr4 (14-74)||(23501747-23501807)
chr4 (14-74)||(37494805-37494865)
chr4 (14-76)||(5313115-5313177)
chr4 (21-75)||(20224937-20224991)
chr4 (20-74)||(20405047-20405101)
chr4 (14-67)||(16408724-16408777)
chr4 (20-77)||(29879624-29879681)
chr4 (14-75)||(30639333-30639394)
chr4 (14-74)||(10660358-10660418)
chr4 (14-74)||(10874503-10874563)
chr4 (14-74)||(11054267-11054327)
chr4 (20-75)||(14590790-14590845)
chr4 (20-74)||(55766593-55766647)
chr4 (14-71)||(16911519-16911576)
chr4 (14-71)||(17315419-17315476)
chr4 (20-74)||(55830848-55830902)
chr4 (34-71)||(18969698-18969735)
[»] chr1 (28 HSPs)
chr1 (14-74)||(20004213-20004273)
chr1 (14-74)||(46991781-46991841)
chr1 (14-74)||(18944620-18944680)
chr1 (14-75)||(8197019-8197080)
chr1 (14-75)||(34725217-34725278)
chr1 (14-74)||(45812656-45812716)
chr1 (21-74)||(22930195-22930248)
chr1 (14-75)||(27474257-27474318)
chr1 (14-75)||(34714599-34714660)
chr1 (15-80)||(41319928-41319993)
chr1 (20-76)||(14617013-14617069)
chr1 (21-77)||(19932880-19932936)
chr1 (14-74)||(32632677-32632737)
chr1 (14-74)||(47214488-47214548)
chr1 (14-56)||(23768441-23768483)
chr1 (21-75)||(27201623-27201677)
chr1 (14-72)||(40424721-40424779)
chr1 (14-55)||(6925096-6925137)
chr1 (34-74)||(10668197-10668237)
chr1 (21-69)||(18742089-18742137)
chr1 (14-70)||(19414420-19414476)
chr1 (14-74)||(38478401-38478461)
chr1 (14-74)||(46248074-46248134)
chr1 (15-54)||(4430148-4430187)
chr1 (20-71)||(25290143-25290194)
chr1 (14-65)||(52910204-52910254)
chr1 (14-68)||(30395849-30395903)
chr1 (15-68)||(12126957-12127010)
[»] chr2 (25 HSPs)
chr2 (14-75)||(25079839-25079900)
chr2 (14-74)||(8455437-8455497)
chr2 (14-74)||(17705449-17705509)
chr2 (21-76)||(23397718-23397773)
chr2 (14-72)||(11514392-11514450)
chr2 (14-75)||(14530271-14530332)
chr2 (14-74)||(5840982-5841042)
chr2 (14-74)||(12024039-12024099)
chr2 (14-82)||(21779380-21779448)
chr2 (14-77)||(22371008-22371071)
chr2 (14-79)||(10543647-10543712)
chr2 (14-73)||(24200746-24200805)
chr2 (14-57)||(44604825-44604868)
chr2 (14-56)||(17667974-17668016)
chr2 (14-76)||(25249858-25249920)
chr2 (29-75)||(39189557-39189603)
chr2 (16-73)||(14544018-14544075)
chr2 (26-74)||(9671134-9671182)
chr2 (21-68)||(27573581-27573628)
chr2 (14-53)||(40416992-40417031)
chr2 (14-56)||(17623536-17623578)
chr2 (14-72)||(19977835-19977893)
chr2 (20-54)||(39914433-39914467)
chr2 (21-74)||(7214488-7214541)
chr2 (20-72)||(17896215-17896267)
[»] chr3 (21 HSPs)
chr3 (14-74)||(13730725-13730785)
chr3 (14-74)||(52926331-52926391)
chr3 (14-76)||(8247810-8247872)
chr3 (21-75)||(40272940-40272994)
chr3 (14-79)||(4495785-4495850)
chr3 (14-74)||(10870072-10870132)
chr3 (17-73)||(25517297-25517353)
chr3 (14-73)||(29366843-29366902)
chr3 (14-76)||(1217064-1217126)
chr3 (14-75)||(7697006-7697067)
chr3 (14-75)||(16735416-16735477)
chr3 (14-75)||(39203491-39203552)
chr3 (14-74)||(46421158-46421218)
chr3 (21-75)||(9607178-9607232)
chr3 (14-56)||(26869701-26869743)
chr3 (29-74)||(6411957-6412002)
chr3 (14-74)||(12914156-12914216)
chr3 (14-76)||(13628913-13628976)
chr3 (14-75)||(5173841-5173903)
chr3 (35-76)||(9276248-9276289)
chr3 (14-75)||(22609742-22609802)
[»] scaffold0168 (1 HSPs)
scaffold0168 (14-74)||(30533-30593)
[»] chr6 (15 HSPs)
chr6 (14-74)||(1346918-1346978)
chr6 (14-74)||(1354876-1354936)
chr6 (22-74)||(1941809-1941861)
chr6 (20-80)||(14975207-14975267)
chr6 (20-76)||(8409195-8409251)
chr6 (14-77)||(9161074-9161137)
chr6 (14-72)||(3815198-3815256)
chr6 (18-71)||(32728281-32728334)
chr6 (14-70)||(20400625-20400681)
chr6 (14-74)||(33922949-33923009)
chr6 (14-56)||(12222038-12222080)
chr6 (14-71)||(12063424-12063481)
chr6 (14-63)||(14553477-14553525)
chr6 (21-70)||(24734591-24734640)
chr6 (20-56)||(6024205-6024241)
[»] scaffold0311 (1 HSPs)
scaffold0311 (14-65)||(10773-10824)
[»] scaffold0057 (1 HSPs)
scaffold0057 (21-76)||(24895-24950)
[»] scaffold0024 (1 HSPs)
scaffold0024 (14-76)||(83827-83889)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-75)||(226533-226588)
[»] scaffold0258 (1 HSPs)
scaffold0258 (14-72)||(13144-13202)
[»] scaffold0187 (4 HSPs)
scaffold0187 (14-75)||(8898-8959)
scaffold0187 (14-71)||(10169-10226)
scaffold0187 (14-75)||(19226-19287)
scaffold0187 (14-71)||(20497-20554)
[»] scaffold0116 (1 HSPs)
scaffold0116 (14-54)||(8865-8905)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 42805538 - 42805302
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatttttataattttccctaataaaattaaaacatttgat 113  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42805538 gaacccgtgaccttccagtcacatgacaacaactttaccagttacgccaaggttacccctcatttttataattttcactaataaaattaaaacatttgat 42805439  T
Q  114 acgcaattaataggaaattatgcaaccatgttataaaagaaagaaataactaaatgaacagccctccatttaaagaaacnnnnnnngaagtataaattta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  42805438 acgcaattaataggaaattatgcaaccatgttataaaagaaagaaataactaaatgaacagccctccatttaaagaaacaaaaaaagaagtataaattta 42805339  T
Q  214 ctttgatatgcagtttggcataaacagagagctcatt 250  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42805338 ctttgatatgcagtttggcataaacaaagagctcatt 42805302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 42763070 - 42762919
Alignment:
Q  77 ttttataattttccctaataaaattaaaacatttgatacgcaattaataggaaattatgcaaccatgttataaaagaaagaaataactaaatgaacagcc 176  Q
    ||||||||||||  ||||||||||||||||||||||||| || |||| |||    ||||||||||||||||||||||||||||||||||||||||||||     
T  42763070 ttttataatttttactaataaaattaaaacatttgatacacagttaagagg----tatgcaaccatgttataaaagaaagaaataactaaatgaacagct 42762975  T
Q  177 ctccatttaaagaaacnnnnnnngaagtataaatttactttgatatgcagtttggc 232  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||    
T  42762974 ctccatttaaagaaacaaaaaagatagtataaatttactttgatatgcagtttggc 42762919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 32758275 - 32758214
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  32758275 gaacctgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 32758214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 21172128 - 21172188
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  21172128 gaacccgtgacctttcagttacatgacaacaactttaccagttgcgccaaggttacccctc 21172188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 42798683 - 42798623
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  42798683 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 42798623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 48735242 - 48735304
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||||    
T  48735242 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctcat 48735304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 7193099 - 7193039
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| |||||||||||||||||| |||||| |||||||||||||||    
T  7193099 gaacccgtgacctttcagtcacatgacaacaactttacaagttacgccaaggttacccctc 7193039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 35334941 - 35334997
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||    
T  35334941 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttatccctcat 35334997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 46354208 - 46354148
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||| | ||||||||||||||||||||||| | |||||||||||||||    
T  46354208 gaacccgtgaccttccaatcacatgacaacaactttaccagttgcgccaaggttacccctc 46354148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 47077974 - 47078034
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  47077974 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 47078034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18327048 - 18326989
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||    
T  18327048 gaacccgtgaccttcaagtcacatgacaacaactttaccagttgcgccaaggttacccct 18326989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 2541140 - 2541202
Alignment:
Q  14 gaacctgtgacctt-ccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  2541140 gaacccgtgacctttccagtcacatgacaacaactttaccagttgcgccaaggttacccctca 2541202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 42495956 - 42496018
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| | ||||||||||||||||||||| | |||||||||||||||||    
T  42495956 gaacccgtgacctttcagtcatatgacaacaactttaccagttgcgccaaggttacccctcat 42496018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 29140486 - 29140538
Alignment:
Q  19 tgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||| ||||||    
T  29140486 tgtgacctttcagttacatgacaacaactttaccagttgcgccaagattaccc 29140538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 42476881 - 42476826
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  42476881 gtgaccttttagtcacatgacaacaactttaccagttacgccaatgttacccctca 42476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 11617709 - 11617751
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtt 56  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  11617709 gaacctgtgacctttcagtcacatgacaacaactttaccagtt 11617751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 21447598 - 21447544
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||| |||||||||||||| |||| ||||| | |||||||||||||||    
T  21447598 gtgaccttccaattacatgacaacaaatttatcagttgcgccaaggttacccctc 21447544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 12473311 - 12473254
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcattt 78  Q
    ||||||| ||| |||||||||||||||||||| ||| | |||||| ||||||||||||    
T  12473311 tgacctttcagatacatgacaacaactttaccggttgcgccaaggctacccctcattt 12473254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 43557479 - 43557426
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||| |||| ||||||||||||||||||||||| |  ||||||||||||||    
T  43557479 tgacctttcagtcacatgacaacaactttaccagttgcggcaaggttacccctc 43557426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 5180285 - 5180337
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    ||||||| |||| ||||||||||||||||||||||| |  |||||||||||||    
T  5180285 tgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttacccct 5180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 47716473 - 47716413
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||| |||||||||| ||||||   |||||||||||||||    
T  47716473 gaacccgtgaccttccagtcacatggcaacaacttttccagttgtgccaaggttacccctc 47716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 7794627 - 7794682
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttac 69  Q
    ||||| ||||||||||||| |||| |||||||||||||||||| | | ||||||||    
T  7794627 gaacccgtgaccttccagtcacataacaacaactttaccagttgcgctaaggttac 7794682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 22699100 - 22699151
Alignment:
Q  23 accttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||| ||||||||||||||||||||||| |  ||||||||||||||    
T  22699100 acctttcagtcacatgacaacaactttaccagttgcgtcaaggttacccctc 22699151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 25198714 - 25198679
Alignment:
Q  36 atgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25198714 atgacaacaactttaccagttacgccaaggttaccc 25198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 34626348 - 34626390
Alignment:
Q  34 acatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  34626348 acatgacaacaactttaccagttgcgctaaggttacccctcat 34626390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 40463891 - 40463837
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggtta 68  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||| | |||||||||    
T  40463891 gaacccgtgaccttacagtcacatgacaacaactttaccggttgcgccaaggtta 40463837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 10693192 - 10693245
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggtt 67  Q
    ||||| |||||||| |||| |||||||||||||||||| |||| | ||||||||    
T  10693192 gaacccgtgacctttcagtcacatgacaacaactttactagttgcgccaaggtt 10693245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 14732958 - 14732999
Alignment:
Q  29 cagttacatgacaacaactttaccagttacaccaaggttacc 70  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  14732958 cagtcacatgacaacaactttaccagttgcgccaaggttacc 14732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 28078252 - 28078313
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||| || |||| | ||| ||||||||||||    
T  28078252 gaacccgtgaccttacagtcacatgacaacaacttcacgagttgcgccagggttacccctca 28078313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 1424037 - 1424073
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagtt 56  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  1424037 gtgaccttccagtcacataacaacaactttaccagtt 1424073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 28817747 - 28817808
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  28817747 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctca 28817808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 36720810 - 36720749
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  36720810 gaacccgtgaccttccagtcacatgacaacaactttaccagttacgccaaggttacccctca 36720749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 35261693 - 35261633
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  35261693 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 35261633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 7136657 - 7136710
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  7136657 tgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 7136710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 30454216 - 30454277
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  30454216 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 30454277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 12670369 - 12670429
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  12670369 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 12670429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 24245465 - 24245405
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  24245465 gaacccgtgacctttcagtcacatgacaacaactttaccagttgccccaaggttacccctc 24245405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 25250536 - 25250474
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    |||| |||||||||||||| |||||||||||||||||||||||   ||||||||||| |||||    
T  25250536 gaacatgtgaccttccagtcacatgacaacaactttaccagttgtgccaaggttacctctcat 25250474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 39461117 - 39461179
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| ||||  |||||||||||||||||||||| | |||||||||||||||||    
T  39461117 gaacccgtgacctttcagtctcatgacaacaactttaccagttgcgccaaggttacccctcat 39461179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 13160716 - 13160655
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | || |||||||||||||    
T  13160716 gaacccgtgaccttacagtcacatgacaacaactttaccagttgcgccgaggttacccctca 13160655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 20869617 - 20869677
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||| |||||    
T  20869617 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttatccctc 20869677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 29521806 - 29521866
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||    
T  29521806 gaacccgtgaccttccagtcacacgacaacaactttatcagttgcgccaaggttacccctc 29521866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 44530163 - 44530103
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||| ||| |||||||| |||||||||||||| | |||||||||||||||    
T  44530163 gaacccgtgaccttctagtcacatgacagcaactttaccagttgcgccaaggttacccctc 44530103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 28407430 - 28407379
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaagg 65  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||    
T  28407430 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaagg 28407379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 2626533 - 2626471
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| | || |||||||||||||||||||| || | |||||||||||||||||    
T  2626533 gaacccgtgacctttcggtcacatgacaacaactttaccaattgcgccaaggttacccctcat 2626471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 17823590 - 17823529
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| | || ||||||||||||||||||||||| | ||||| ||||||||||    
T  17823590 gaacccgtgacctttcggtcacatgacaacaactttaccagttgcgccaagattacccctca 17823529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 26954146 - 26954086
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||| | | |||||||||||||||||||| |||| |||| ||||||||||    
T  26954146 gaacccgtgaccttctaatcacatgacaacaactttaccaattacgccaaagttacccctc 26954086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 45071279 - 45071219
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| || | ||||||||||||||||||||||  | |||||||||||||||    
T  45071279 gaacccgtgaccttacaatcacatgacaacaactttaccagtatcgccaaggttacccctc 45071219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 6760836 - 6760775
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| ||||||||| ||| | ||||||||||||||||||||| | |||| ||||||||||||    
T  6760836 gaacccgtgaccttctagtcatatgacaacaactttaccagttgcgccaa-gttacccctcat 6760775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 23286434 - 23286476
Alignment:
Q  34 acatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  23286434 acatgacaacaactttaccagttgcgacaaggttacccctcat 23286476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 18164880 - 18164941
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||| ||| ||| | ||||| ||||||||||    
T  18164880 gaacccgtgacctttcagtcacatgacaacaacttcaccggttgcgccaagattacccctca 18164941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 40605046 - 40605087
Alignment:
Q  34 acatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||||||||||||||||||| | |||| |||||||||||    
T  40605046 acatgacaacaactttaccagttgcgccaaagttacccctca 40605087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 20284194 - 20284250
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacc 70  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||| |  ||||||||||    
T  20284194 gaacccgtgacctttcagtcacatgacaacaactttacccgttgcgtcaaggttacc 20284250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 21070823 - 21070879
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacc 70  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||| |  ||||||||||    
T  21070823 gaacccgtgacctttcagtcacatgacaacaactttacccgttgcgtcaaggttacc 21070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 40607852 - 40607884
Alignment:
Q  21 tgaccttccagttacatgacaacaactttacca 53  Q
    |||| ||||||||||||||||||||||||||||    
T  40607852 tgacattccagttacatgacaacaactttacca 40607884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 41014333 - 41014268
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatttt 79  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  41014333 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctcatttt 41014268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 37024675 - 37024736
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  37024675 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcaccaaggttacccctca 37024736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 24448904 - 24448844
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  24448904 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 24448844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 35710327 - 35710267
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  35710327 gaacccgtgacctttcagttacatgacaacaactttaccagttgcgccaaggttacccctc 35710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 4619227 - 4619284
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  4619227 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 4619284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 38879595 - 38879534
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  38879595 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 38879534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 22600468 - 22600407
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| || |||||||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  22600468 gaacccgtaaccttccagtcacatgataacaactttaccagttacgtcaaggttacccctca 22600407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 23974794 - 23974734
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||    
T  23974794 gaacccgtgaccttccagtcacatgacaacaactttacc-gttgcgccaaggttacccctca 23974734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 43334216 - 43334159
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||    
T  43334216 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 43334159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 1565437 - 1565385
Alignment:
Q  22 gaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  1565437 gacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 1565385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 27328766 - 27328709
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    |||||||||||||| |||| |||||||||||||||||||| || |  |||||||||||    
T  27328766 gaacctgtgacctttcagtcacatgacaacaactttaccaattgcgtcaaggttaccc 27328709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 8170103 - 8170163
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| | || ||||||||||||||||||||||| | ||||||||| |||||    
T  8170103 gaacccgtgacctttcggtcacatgacaacaactttaccagttgcgccaaggttagccctc 8170163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 31299626 - 31299591
Alignment:
Q  34 acatgacaacaactttaccagttacaccaaggttac 69  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31299626 acatgacaacaactttaccagttgcaccaaggttac 31299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 19438741 - 19438703
Alignment:
Q  36 atgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  19438741 atgacaacaactttaccagttgcgccaaggttacccctc 19438703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 2838777 - 2838733
Alignment:
Q  29 cagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    |||| ||||||||||||||||||| ||| | ||||||||||||||    
T  2838777 cagtcacatgacaacaactttaccggttgcgccaaggttacccct 2838733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 22187298 - 22187238
Alignment:
Q  15 aacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||| |||||||| |||| | |||||||||||||||| |||| | |||| |||||||||||    
T  22187298 aaccggtgacctttcagtcaaatgacaacaactttactagttgcgccaaagttacccctca 22187238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 41956924 - 41956884
Alignment:
Q  36 atgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  41956924 atgacaacaactttaccagttgcgccaatgttacccctcat 41956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 13256518 - 13256578
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  13256518 gaacctatgaccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctc 13256578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 47528649 - 47528709
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||    
T  47528649 gaacctgtgacctttcagtcacatgacaacaactttaccagttgcaccaaggttacccctc 47528709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 21646978 - 21646918
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||    
T  21646978 gaacctgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttatccctc 21646918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 48598944 - 48599006
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||||    
T  48598944 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctcat 48599006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 5648273 - 5648212
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  5648273 gaacccgtgaccttacagtcacatgacaacaactttaccagttgcgccaaggttacccctca 5648212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 6430746 - 6430807
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  6430746 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 6430807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 5306784 - 5306848
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcattt 78  Q
    ||||| |||||||| |||| |||||||| |||||||||||||| | |||||||||||||||||||    
T  5306784 gaacccgtgacctttcagtcacatgacatcaactttaccagttgcgccaaggttacccctcattt 5306848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 23501807 - 23501747
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  23501807 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 23501747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 37494865 - 37494805
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||||||| ||||  |||| ||||||||||||||||| |||||||||||||||||    
T  37494865 gaacctgtgacctttcagtcgcatggcaacaactttaccagttgcaccaaggttacccctc 37494805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 5313115 - 5313177
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| || | ||||||||||||||||||||||||| |||||||||||| ||||    
T  5313115 gaacccgtgacctttcaatcacatgacaacaactttaccagttacgccaaggttacccgtcat 5313177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 20224991 - 20224937
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  20224991 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 20224937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 20405101 - 20405047
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  20405101 gtgaccttccagtcacatgacaacaactttaccagttgcgtcaaggttacccctc 20405047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 16408724 - 16408777
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggtt 67  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  16408724 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggtt 16408777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 29879624 - 29879681
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatt 77  Q
    ||||||||| ||| ||||||||||||||||| ||||| |||||| |||||||||||||    
T  29879624 gtgaccttctagtcacatgacaacaactttatcagttgcaccaatgttacccctcatt 29879681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 30639394 - 30639333
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||| ||||||||||||||||||| | ||||||||||||||||    
T  30639394 gaaccagtgacctttcagtcacaagacaacaactttaccagttgcgccaaggttacccctca 30639333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10660418 - 10660358
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||| ||| ||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  10660418 gaacatgtaacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 10660358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10874563 - 10874503
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||| ||| ||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  10874563 gaacatgtaacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 10874503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 11054267 - 11054327
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||| ||||||||||    
T  11054267 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaagttacccctc 11054327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 14590845 - 14590790
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||||||| |||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  14590845 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccactca 14590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 55766593 - 55766647
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||| || ||||||||||||||||||||||| |  ||||||||||||||    
T  55766593 gtgaccttccggtcacatgacaacaactttaccagttgcgtcaaggttacccctc 55766647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 16911576 - 16911519
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| ||||||||  ||| ||||||||||||||||||||||| | ||||||||||||    
T  16911576 gaacccgtgacctttaagtcacatgacaacaactttaccagttgcgccaaggttaccc 16911519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 17315419 - 17315476
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||| | ||||||||||||    
T  17315419 gaacccgtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 17315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 55830848 - 55830902
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||  | ||||||||||||||||||||||| |  ||||||||||||||    
T  55830848 gtgaccttccgatcacatgacaacaactttaccagttgcgtcaaggttacccctc 55830902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 18969735 - 18969698
Alignment:
Q  34 acatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  18969735 acatgacaacaactttaccagttgcgccaaggttaccc 18969698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 20004213 - 20004273
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20004213 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctc 20004273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 46991841 - 46991781
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  46991841 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctc 46991781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 18944680 - 18944620
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  18944680 gaacctgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 18944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 8197080 - 8197019
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  8197080 gaacccgtgacctttcagtcacatgacaacaacttgaccagttgcaccaaggttacccctca 8197019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 34725217 - 34725278
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  34725217 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 34725278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 45812656 - 45812716
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||||||| |||| ||||||||||||||||| ||||| | |||||||||||||||    
T  45812656 gaacctgtgacctttcagtcacatgacaacaactttatcagttgcgccaaggttacccctc 45812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 22930195 - 22930248
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  22930195 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 22930248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 27474318 - 27474257
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||||||||||||| |||| |||||||||||||||||||||||   | ||||||||||||||    
T  27474318 gaacctgtgacctttcagtcacatgacaacaactttaccagttgagctaaggttacccctca 27474257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 34714660 - 34714599
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| || | ||||||||||||||||||||||| | ||||||||||||||||    
T  34714660 gaacccgtgacctttcaatcacatgacaacaactttaccagttgcgccaaggttacccctca 34714599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 41319928 - 41319993
Alignment:
Q  15 aacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcattttt 80  Q
    ||||||||||||| |||| |||||||||||||||||||||||    ||||||||||||||| ||||    
T  41319928 aacctgtgacctttcagtcacatgacaacaactttaccagttgtgtcaaggttacccctcaatttt 41319993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 14617069 - 14617013
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    |||||||| |||| ||||||||||||||||||| ||| | |||||||||||||||||    
T  14617069 gtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttacccctcat 14617013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 19932880 - 19932936
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatt 77  Q
    ||||||| |||| ||||||||||||||||||||||| | ||||||| ||||||||||    
T  19932880 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggtaacccctcatt 19932936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 32632677 - 32632737
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| | ||||||||||||||||||||| | |||||||||||||||    
T  32632677 gaacccgtgacctttcagtcatatgacaacaactttaccagttgcgccaaggttacccctc 32632737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 47214548 - 47214488
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||| ||||||||||    
T  47214548 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaagttacccctc 47214488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 23768441 - 23768483
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtt 56  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  23768441 gaacctgtgaccttacagtcacatgacaacaactttaccagtt 23768483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 27201677 - 27201623
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||| |||| |||||||||||||||||||| |||| | ||||||||||||||    
T  27201677 tgacctttcagtcacatgacaacaactttaccatttacgctaaggttacccctca 27201623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 40424779 - 40424721
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccc 72  Q
    ||||| ||| |||| |||| ||||||||||||||||||||||| | |||||||||||||    
T  40424779 gaacccgtggcctttcagtcacatgacaacaactttaccagttgcgccaaggttacccc 40424721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 6925137 - 6925096
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagt 55  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  6925137 gaacccgtgaccttccagtcacatgacaacaactttaccagt 6925096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 10668237 - 10668197
Alignment:
Q  34 acatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  10668237 acatgacaacaactttaccagttgcgccaaggttacccctc 10668197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 18742089 - 18742137
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttac 69  Q
    ||||||| |||| ||||||||||||||||||||||| | ||||||||||    
T  18742089 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttac 18742137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 19414476 - 19414420
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacc 70  Q
    ||||| |||||||| |||| | |||||||||||||||||| |||| |||||||||||    
T  19414476 gaacccgtgacctttcagtcatatgacaacaactttaccaattacgccaaggttacc 19414420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 38478401 - 38478461
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| |||||||||||| ||||| |||| | |||||||||||||||    
T  38478401 gaacccgtgacctttcagtcacatgacaacaagtttactagttgcgccaaggttacccctc 38478461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 46248074 - 46248134
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||| || |||| |||||||||||||||||||||||   |||||||||||||||    
T  46248074 gaacccgtgacatttcagtcacatgacaacaactttaccagttgagccaaggttacccctc 46248134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 4430148 - 4430187
Alignment:
Q  15 aacctgtgaccttccagttacatgacaacaactttaccag 54  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  4430148 aacccgtgaccttccagtcacatgacaacaactttaccag 4430187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 25290194 - 25290143
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    |||||||| |||| ||||||||||||||||||| ||| | ||||||||||||    
T  25290194 gtgacctttcagtcacatgacaacaactttacctgttgcgccaaggttaccc 25290143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 52910254 - 52910204
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaagg 65  Q
    |||||||||||||| |||| ||||||||||||||||||| ||| ||||||||    
T  52910254 gaacctgtgacctttcagtcacatgacaacaactttacc-gttgcaccaagg 52910204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 30395849 - 30395903
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggtta 68  Q
    ||||| ||||||||  ||| ||||||||||||||||||||||| | |||||||||    
T  30395849 gaacccgtgaccttaaagtcacatgacaacaactttaccagttgcgccaaggtta 30395903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 12126957 - 12127010
Alignment:
Q  15 aacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggtta 68  Q
    |||| |||||||| || |||||||||||||||||||| |||| | |||||||||    
T  12126957 aacccgtgacctttcaattacatgacaacaactttacgagttgcgccaaggtta 12127010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 25079839 - 25079900
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  25079839 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctca 25079900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 8455437 - 8455497
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  8455437 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 8455497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 17705509 - 17705449
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  17705509 gaacccgtgaccttctagtcacatgacaacaactttaccagttgcaccaaggttacccctc 17705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 23397773 - 23397718
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  23397773 tgacctttcagtcacatgacaacaactttaccagttgcaccaaggttacccctcat 23397718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 11514450 - 11514392
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccc 72  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  11514450 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccc 11514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 14530332 - 14530271
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  14530332 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctca 14530271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 5841042 - 5840982
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||||    
T  5841042 gaacccgtgaccttccagtcacatgacaacaactttatcatttgcaccaaggttacccctc 5840982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 12024039 - 12024099
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  12024039 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 12024099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 21779380 - 21779448
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatttttat 82  Q
    ||||| |||||||| |||| ||||||||||||||| ||||||| | |||||||||||||||| ||||||    
T  21779380 gaacccgtgacctttcagtcacatgacaacaacttcaccagttgcgccaaggttacccctcacttttat 21779448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 22371071 - 22371008
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatt 77  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||   ||||||||||||||||||    
T  22371071 gaacccgtgacctcccagtcacatgacaacaactttaccagttgggccaaggttacccctcatt 22371008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 10543712 - 10543647
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatttt 79  Q
    ||||| |||||||| |||| ||||||||||||||||| ||||| | |||||||||||||| |||||    
T  10543712 gaacccgtgacctttcagtcacatgacaacaactttatcagttgcgccaaggttaccccttatttt 10543647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 24200746 - 24200805
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    ||||| ||||| || |||| ||||||||||||||||||||||| || |||||||||||||    
T  24200746 gaacccgtgacttttcagtcacatgacaacaactttaccagttgcatcaaggttacccct 24200805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 44604868 - 44604825
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtta 57  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  44604868 gaacctgtgaccttccagtcacatgacaacaactttagcagtta 44604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 17668016 - 17667974
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtt 56  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  17668016 gaacccgtgaccttccagtcacatgacaacaactttaccagtt 17667974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 25249858 - 25249920
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| |||||||||||||||||||| || | |||||||||||| ||||    
T  25249858 gaacccgtgaccttacagtcacatgacaacaactttaccaattgcgccaaggttacccatcat 25249920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 39189557 - 39189603
Alignment:
Q  29 cagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  39189557 cagtcacatgacaacaactttaccagttgcgccaaggttacccctca 39189603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 14544075 - 14544018
Alignment:
Q  16 acctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    |||||| ||||| |||| |||||||||||||||||||| || | ||||||||||||||    
T  14544075 acctgtaacctttcagtcacatgacaacaactttaccaattgcgccaaggttacccct 14544018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9671182 - 9671134
Alignment:
Q  26 ttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||| ||||||||||||||||||| ||| | |||||||||||||||    
T  9671182 ttccagtcacatgacaacaactttaccggttgcgccaaggttacccctc 9671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 27573628 - 27573581
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggtta 68  Q
    ||||||| |||| ||||||||||||||||||||||| | |||||||||    
T  27573628 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggtta 27573581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 40416992 - 40417031
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttacca 53  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  40416992 gaacccgtgaccttccagtcacatgacaacaactttacca 40417031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 17623578 - 17623536
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtt 56  Q
    ||||| |||||||||||||  ||||||||||||||||||||||    
T  17623578 gaacccgtgaccttccagtcgcatgacaacaactttaccagtt 17623536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 19977835 - 19977893
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccc 72  Q
    ||||| |||||||| | || ||||||||||||||| ||||||| | |||||||||||||    
T  19977835 gaacccgtgacctttcggtcacatgacaacaacttcaccagttccgccaaggttacccc 19977893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 39914433 - 39914467
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccag 54  Q
    ||||||||||||| |||||||||||||||||||||    
T  39914433 gtgaccttccagtcacatgacaacaactttaccag 39914467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 7214541 - 7214488
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||| |||| |||||||||||||||||||||||   |||| ||||||||||    
T  7214541 tgacctttcagtcacatgacaacaactttaccagttgtgccaaagttacccctc 7214488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 17896267 - 17896215
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccc 72  Q
    |||||||| | || ||||||||||||||||||||||| |  ||||||||||||    
T  17896267 gtgacctttcggtcacatgacaacaactttaccagttgcgtcaaggttacccc 17896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 13730725 - 13730785
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  13730725 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 13730785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 52926331 - 52926391
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  52926331 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 52926391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 8247810 - 8247872
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||||    
T  8247810 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctcat 8247872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 40272940 - 40272994
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  40272940 tgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctca 40272994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 4495785 - 4495850
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatttt 79  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| | | ||||||||||||| ||||    
T  4495785 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgcgaaggttacccctcctttt 4495850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 10870072 - 10870132
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  10870072 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 10870132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 25517297 - 25517353
Alignment:
Q  17 cctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||    
T  25517297 cctgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttatccct 25517353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 29366843 - 29366902
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccct 73  Q
    ||||| ||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||    
T  29366843 gaacccgtgaccttttagtcacatgacaacaactttaccagttacgccaaggttacccct 29366902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 1217126 - 1217064
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| ||||||| ||||||||||||||| | |||||||||||||||||    
T  1217126 gaacccgtgacctttcagtgacatgactacaactttaccagttgcgccaaggttacccctcat 1217064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 7697006 - 7697067
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| ||||||||  ||| ||||||||||||||||||||||| | ||||||||||||||||    
T  7697006 gaacccgtgaccttttagtcacatgacaacaactttaccagttgcgccaaggttacccctca 7697067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 16735477 - 16735416
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| ||||| || |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  16735477 gaacccgtgacgttacagtcacatgacaacaactttaccagttgcgccaaggttacccctca 16735416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 39203552 - 39203491
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||||||||||||| |||| |||||||||||||||||| ||||   ||||||||||||||||    
T  39203552 gaacctgtgacctttcagtcacatgacaacaactttacaagttgtgccaaggttacccctca 39203491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 46421158 - 46421218
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| ||||||||  ||| ||||||||||||||||||||||| | |||||||||||||||    
T  46421158 gaacccgtgacctttaagtcacatgacaacaactttaccagttgcgccaaggttacccctc 46421218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 9607232 - 9607178
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||    
T  9607232 tgacctttcagtcacatgacaacaactttacaagttgcgccaaggttacccctca 9607178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 26869743 - 26869701
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtt 56  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  26869743 gaacctgtgacctttcagtcacatgacaacaactttaccagtt 26869701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 6411957 - 6412002
Alignment:
Q  29 cagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||    
T  6411957 cagttacatgacaacaactttaccagttgcgtcaaggttacccctc 6412002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 12914156 - 12914216
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    |||| ||||||||| | || |||| |||||||||||||||||| | |||||||||||||||    
T  12914156 gaacttgtgacctttcggtcacattacaacaactttaccagttgcgccaaggttacccctc 12914216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 13628913 - 13628976
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaac-tttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| ||||||||||||| ||||||||||   |||||||||||||||||    
T  13628913 gaacccgtgacctttcagtcacatgacaacaacttttaccagttgtgccaaggttacccctcat 13628976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 5173841 - 5173903
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaac-tttaccagttacaccaaggttacccctca 75  Q
    ||||| |||||||| |||| ||||||||||||| ||||| |||| | ||||||||||||||||    
T  5173841 gaacccgtgacctttcagtcacatgacaacaacttttacgagttgcgccaaggttacccctca 5173903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 9276289 - 9276248
Alignment:
Q  35 catgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  9276289 catgacaacaactttactagttgcgccaaggttacccctcat 9276248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 22609802 - 22609742
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||| || ||||| |||| ||||||||||||||||||| ||| | ||||||||||||||||    
T  22609802 gaacccgttaccttacagtcacatgacaacaactttacc-gttgcgccaaggttacccctca 22609742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 30593 - 30533
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  30593 gaaccggtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 30533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 1346978 - 1346918
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  1346978 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 1346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 1354876 - 1354936
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||||||    
T  1354876 gaaccagtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 1354936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 1941861 - 1941809
Alignment:
Q  22 gaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  1941861 gaccttccagtcagatgacaacaactttaccagttgcaccaaggttacccctc 1941809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 14975207 - 14975267
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcattttt 80  Q
    ||||||||||||| ||||||||||||||||||| ||| | ||||||||| |||||||||||    
T  14975207 gtgaccttccagtcacatgacaacaactttaccggttgcgccaaggttatccctcattttt 14975267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 8409251 - 8409195
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    |||||||| |||| |||| |||||||||||||||||| | |||||||||||||||||    
T  8409251 gtgacctttcagtcacattacaacaactttaccagttgcgccaaggttacccctcat 8409195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 9161137 - 9161074
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcatt 77  Q
    |||||||||||||| |||| |||||||||||||||||||  || |  |||||||||||||||||    
T  9161137 gaacctgtgacctttcagtcacatgacaacaactttaccgattgcgtcaaggttacccctcatt 9161074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 3815198 - 3815256
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccc 72  Q
    ||||| ||||| || |||| ||||||||||||||||||||||| | |||||||||||||    
T  3815198 gaacccgtgacatttcagtcacatgacaacaactttaccagttgcgccaaggttacccc 3815256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 32728281 - 32728334
Alignment:
Q  18 ctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    |||||||||| |||| ||||||||||||||||||  ||| ||||||||||||||    
T  32728281 ctgtgacctttcagtcacatgacaacaactttactcgttccaccaaggttaccc 32728334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 20400681 - 20400625
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacc 70  Q
    |||||||||||||| |||| |||||||||||||| ||||| || | |||||||||||    
T  20400681 gaacctgtgacctttcagtcacatgacaacaactataccaattgcgccaaggttacc 20400625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 33922949 - 33923009
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctc 74  Q
    ||||||||||| || |||| | ||||||||||||||||| ||| | |||||||||||||||    
T  33922949 gaacctgtgacttttcagtcaaatgacaacaactttaccggttgcgccaaggttacccctc 33923009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 12222038 - 12222080
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagtt 56  Q
    ||||| |||||||| |||| |||||||||||||||||||||||    
T  12222038 gaacccgtgacctttcagtcacatgacaacaactttaccagtt 12222080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 12063481 - 12063424
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| |||||||| ||||  ||||| |||||||||| ||||| ||||||||||||||    
T  12063481 gaacccgtgacctttcagtctcatgataacaactttatcagttgcaccaaggttaccc 12063424  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 14553525 - 14553477
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaa 63  Q
    ||||||||||||||  ||| ||||||||||||||||||||||| ||||||    
T  14553525 gaacctgtgaccttt-agtcacatgacaacaactttaccagttgcaccaa 14553477  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 24734640 - 24734591
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacc 70  Q
    ||||||| |||| ||||||||||||||||||||||| | |||| ||||||    
T  24734640 tgacctttcagtcacatgacaacaactttaccagttgcgccaatgttacc 24734591  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 6024241 - 6024205
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagtt 56  Q
    ||||||||||| | |||||||||||||||||||||||    
T  6024241 gtgaccttccaatcacatgacaacaactttaccagtt 6024205  T

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Target: scaffold0311 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 10824 - 10773
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaagg 65  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  10824 gaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaagg 10773  T

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Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 24895 - 24950
Alignment:
Q  21 tgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||||| |||| ||||||||||||||||||||||| | |||||||||||||||||    
T  24895 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctcat 24950  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 83889 - 83827
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctcat 76  Q
    ||||| |||||||| |||| |||||||||||||||||| |||| | |||||||||||||||||    
T  83889 gaacccgtgacctttcagtcacatgacaacaactttactagttgcgccaaggttacccctcat 83827  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 226533 - 226588
Alignment:
Q  20 gtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    |||||||| |||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  226533 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccactca 226588  T

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Target: scaffold0258 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 13144 - 13202
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccc 72  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||| | |||||||||||||    
T  13144 gaaccggtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttacccc 13202  T

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Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 8959 - 8898
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||||||| || |||| ||||||||||||||| ||| ||| | ||||||||||||||||    
T  8959 gaacctgtgacatttcagtcacatgacaacaacttcaccggttgcgccaaggttacccctca 8898  T

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Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 10169 - 10226
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |  |||||||||||    
T  10169 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 10226  T

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Target: scaffold0187; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 19287 - 19226
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttacccctca 75  Q
    ||||||||||| || |||| ||||||||||||||| ||| ||| | ||||||||||||||||    
T  19287 gaacctgtgacatttcagtcacatgacaacaacttcaccggttgcgccaaggttacccctca 19226  T

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Target: scaffold0187; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 20497 - 20554
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccagttacaccaaggttaccc 71  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |  |||||||||||    
T  20497 gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 20554  T

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Target: scaffold0116 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 8905 - 8865
Alignment:
Q  14 gaacctgtgaccttccagttacatgacaacaactttaccag 54  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  8905 gaacctgtgaccttacagtcacatgacaacaactttaccag 8865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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