View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_71 (Length: 223)
Name: NF1359_low_71
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_71 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 45992881 - 45993024
Alignment:
| Q |
18 |
cacagaccacataagcaacaacgagacagaactaatgtacacaaaaaatcaaccactctagtgaacattaaataacttataaaagaactccaagtcatga |
117 |
Q |
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| T |
45992881 |
cacagaccacataagcaacaacgagacagaactagtgtacacaaaaaaccaaccactctagtaaacattaaataacttataaaagaactccaattcatga |
45992980 |
T |
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| Q |
118 |
tcccacacctacaatcttcacacaatgtcatgtcatcatcttcatc |
163 |
Q |
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| T |
45992981 |
tcc--cacctacaatcttcacacaatgtcatgtcatcatcttcatc |
45993024 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 52926209 - 52926154
Alignment:
| Q |
168 |
aaaccaacccacaggttgctcccggtccaccttgcctttccactcttgaaggtggt |
223 |
Q |
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| T |
52926209 |
aaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggt |
52926154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 35454318 - 35454397
Alignment:
| Q |
75 |
ctagtgaacattaaataacttataaaagaactccaagtcatgatcccacacctacaatcttcacacaatgtcatgtcatcat |
156 |
Q |
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| T |
35454318 |
ctagtgaacattaaacaacttataaaagaacattaactcatgatcc--aatctacaatcttcacacaatttaacgtcatcat |
35454397 |
T |
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