View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_8 (Length: 516)
Name: NF1359_low_8
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 111 - 506
Target Start/End: Complemental strand, 39677347 - 39676959
Alignment:
| Q |
111 |
gtgttcagtcttttgtatcaagttattatcaagaagatttatagttcttctnnnnnnnnttcatccttttatctaacatcccacaacttcaacatggtat |
210 |
Q |
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| T |
39677347 |
gtgttcagtcttttgtatcaagttattatgaagaagatttatagttct---aaaaaatattcatccttttaactaacatcccacaacttcaacatggtat |
39677251 |
T |
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| Q |
211 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgg-acaattttatagttgtatacttgtatttgggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
39677250 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgggacaattttatagttgtatacttgtgtttgggaa |
39677151 |
T |
|
| Q |
310 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcatgacacacgacatgtgccattacatctagcaactcttgcaggtgcgtgaagacca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39677150 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcatgacacacgacatgt-----tacatctagcaactcttgcaggtgcgtgaagacca |
39677056 |
T |
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| Q |
410 |
tgcgccgctatacaggctgtcgttgacgaaggcgacttcattgttgttctctccagctattcctctttcttgtttggtattggcttgttggcctttg |
506 |
Q |
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| T |
39677055 |
tgcaccgctatacaggctgtctttgacgaaggcgacttcattgttgttctctccagctattcctctttcttgtttggtattggcttgttggcctttg |
39676959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 5559349 - 5559312
Alignment:
| Q |
16 |
tgttgtgttttgagcattagaggcaagtttgagcaaga |
53 |
Q |
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| T |
5559349 |
tgttgtgttttgagcgttagaggcaagcttgagcaaga |
5559312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 34149971 - 34150012
Alignment:
| Q |
24 |
tttgagcattagaggcaagtttgagcaagattaatgcaagac |
65 |
Q |
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| T |
34149971 |
tttgagcattagaggcaagcttgagcaagattgaggcaagac |
34150012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 18112811 - 18112740
Alignment:
| Q |
7 |
gaagctttatgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagacgcaacagctaggg |
78 |
Q |
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| T |
18112811 |
gaagctttatgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagacacaagagctaggg |
18112740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 19357847 - 19357884
Alignment:
| Q |
16 |
tgttgtgttttgagcattagaggcaagtttgagcaaga |
53 |
Q |
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| T |
19357847 |
tgttgtgttttgagcgttagaggcaagcttgagcaaga |
19357884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 31316361 - 31316290
Alignment:
| Q |
7 |
gaagctttatgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagacgcaacagctaggg |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
31316361 |
gaagctttatgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagacacaagagctaggg |
31316290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 2694620 - 2694657
Alignment:
| Q |
16 |
tgttgtgttttgagcattagaggcaagtttgagcaaga |
53 |
Q |
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| T |
2694620 |
tgttgtgttttgagcattagaggcaagcttgagcaaga |
2694657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 37367594 - 37367631
Alignment:
| Q |
16 |
tgttgtgttttgagcattagaggcaagtttgagcaaga |
53 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
37367594 |
tgttgtgttttgagcattagaggcaagcttgagcaaga |
37367631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 41529978 - 41529941
Alignment:
| Q |
16 |
tgttgtgttttgagcattagaggcaagtttgagcaaga |
53 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |
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| T |
41529978 |
tgttgtgttttgagcgttagaggcaagcttgagcaaga |
41529941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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