View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_low_81 (Length: 205)
Name: NF1359_low_81
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45138481 - 45138539
Alignment:
| Q |
1 |
aatcagataacaacctcattagaatctctcaggaactaacaccaatatacctccctcta |
59 |
Q |
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| T |
45138481 |
aatcagataacaacctcattagaatctctctggaactaacaccaatatacctccctcta |
45138539 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 45138539 - 45138571
Alignment:
| Q |
78 |
atacaaaagaggagaggagagactggataacct |
110 |
Q |
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| T |
45138539 |
atacaaaagaggagaggagagagtggataacct |
45138571 |
T |
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