View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13600_high_4 (Length: 225)
Name: NF13600_high_4
Description: NF13600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13600_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 5123619 - 5123801
Alignment:
| Q |
29 |
gagagatgaactttggaatagttccattaagctggtttgaactcagatccaaatgaaccaaatcaggaacagatgaaaatgaatctgggatagacccaga |
128 |
Q |
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| T |
5123619 |
gagaaatgaactttggaatagttccattaagctggtttgaactcagatccaaatgaaccaaatcaggaacagatgaaaatgaatctgggatagacccaga |
5123718 |
T |
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| Q |
129 |
aaatgaatttgaagctaaagatagattttttagagaaatcaagtcaccaatggaagagggtatttcaccaacaagcttattag |
211 |
Q |
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| T |
5123719 |
aaatgaatttgaagctaaagatagattttttagagaaatcaagtcaccaatggaagagggtatttcaccaacaagcttattag |
5123801 |
T |
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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 35921498 - 35921661
Alignment:
| Q |
34 |
atgaactttggaatagttccattaagctggtttgaactcagatccaaatgaaccaaatcaggaacagatgaaaatgaatctgggatagacccagaaaatg |
133 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| | |||| | |||| |||||||||||||||||| ||||||| |
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| T |
35921498 |
atgaactttggaattgttccattgagctggtttgaactcagatccatgtgaaccaaacctggaattgcagaaattgaatctgggatagaccctgaaaatg |
35921597 |
T |
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| Q |
134 |
aatttgaagctaaagatagattttttagagaaatcaagtcaccaatggaagagggtatttcacc |
197 |
Q |
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|||||||||| ||||| |||||||| || ||||| ||||| || | ||||||||||| ||||| |
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| T |
35921598 |
aatttgaagccaaagaaagatttttaagggaaattaagtcccctaatgaagagggtatctcacc |
35921661 |
T |
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