View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13600_low_3 (Length: 246)
Name: NF13600_low_3
Description: NF13600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13600_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 30393426 - 30393654
Alignment:
| Q |
18 |
caacccatactaaaatttacctattttagggcttttgaggtcccctatctctctgaccttttacctttgtgtcataatttcaaattcgtttttagaagat |
117 |
Q |
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| T |
30393426 |
caacccatactaaaattgacctattttaaggcttttgaggtcccctatctctctgaccttttacctttgtgtcataatttcaaattcgtttttagaagat |
30393525 |
T |
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| Q |
118 |
gaattaaacatcaactttgtgggacaagcatcccatactcttgttacagattttctttacctaagtgaatgaaactaccgacacatgtgaatgggtacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393526 |
gaattaaacatcaactttgtgggacaagcatcccatactcttgttacagattttctttacctaagtgaatgaaactaccgacacatgtgaatgggtacat |
30393625 |
T |
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| Q |
218 |
catttctttgtcatcaggaccaatatttt |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30393626 |
catttctttgtcatcaggaccaatatttt |
30393654 |
T |
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