View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13600_low_4 (Length: 228)
Name: NF13600_low_4
Description: NF13600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13600_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43144633 - 43144425
Alignment:
| Q |
1 |
taacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144633 |
taacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctg |
43144534 |
T |
|
| Q |
101 |
caagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144533 |
caagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgt |
43144434 |
T |
|
| Q |
201 |
tgtatatga |
209 |
Q |
| |
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||||||||| |
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| T |
43144433 |
tgtatatga |
43144425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43156994 - 43156786
Alignment:
| Q |
1 |
taacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctg |
100 |
Q |
| |
|
|||||||||||| |||||| |||| || ||||||||||||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
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| T |
43156994 |
taacaacctaccaaaaaaggaaaagtagtgtgctcaccagcagaagtataggccgtttcttcaagtgaatatccgttactataaaatctaaatgctgctg |
43156895 |
T |
|
| Q |
101 |
caagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgt |
200 |
Q |
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||||||||||| |||| || || |||| |||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
43156894 |
caagatgaatcgttgcaataaaaaatggtgctacgaatccccatgacaaatagcagtgaacaccaaacaatgcacggttcatcacccagttaatgtttgt |
43156795 |
T |
|
| Q |
201 |
tgtatatga |
209 |
Q |
| |
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||||||||| |
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| T |
43156794 |
tgtatatga |
43156786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33832996 - 33833073
Alignment:
| Q |
1 |
taacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatccctta |
78 |
Q |
| |
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|||||||||||||||||||||||| | ||| ||||||| ||| || ||||||||||| || | |||||| |||||| |
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| T |
33832996 |
taacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaaccctta |
33833073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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