View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13601_high_10 (Length: 286)
Name: NF13601_high_10
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 39663324 - 39663070
Alignment:
| Q |
23 |
tataactacttcgagcggggcaaccttgatatattcagtggtagaggtccttgtttggatggacctgtttgcaacatgaacttaacttcagacgggtcgg |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
39663324 |
tataactactttgagcggggcaaccttgatatattcagtggtagaggtccttgtttggatggacctgtttgcaatatgaacttgacttcagatgggtcgg |
39663225 |
T |
|
| Q |
123 |
gttctcatcacggttggtattgtaattatgtggaggttaccaccactggggcccacattccctgtgctcaacaacagttcgaggtggaacagtggctagc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39663224 |
gttctcatcacggttggtattgtaattatgtggaggttaccaccactggggcccacattccctgtgctcaacagcagttcgaggtggaacagtggctagc |
39663125 |
T |
|
| Q |
223 |
taccgacacatcgccatatgagctttctgctattcggaacaactgccagtataat |
277 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
39663124 |
taccgacacatcgccatacgagctttctgctattaggaacaactgccaatataat |
39663070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 39667503 - 39667264
Alignment:
| Q |
23 |
tataactacttcgagcggggcaaccttgatatattcagtggtagaggtccttgtttggatggacctgtttgcaacatgaacttaacttcagacgggtcgg |
122 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| | || || |||||||||||||||| |
|
|
| T |
39667503 |
tataactactatgaacggggcaaccttgatatattcagtggcaaaggtccttgtttggaaggacctgtttgtgcggtaaatttgacttcagacgggtcgg |
39667404 |
T |
|
| Q |
123 |
gttctcatcacggttggtattgtaattatgtggaggttaccaccactggggcccacattccctgtgctcaacaacagttcgaggtggaacagtggctagc |
222 |
Q |
| |
|
|| ||||||| || ||||||||||||||||| |||||||| | ||||| | |||||||| || ||||| |||||||| || |||||||| ||||| || |
|
|
| T |
39667403 |
gtcctcatcatgggtggtattgtaattatgttgaggttacttctactggagtacacattccttgcgctcagcaacagtttgaagtggaacaatggcttgc |
39667304 |
T |
|
| Q |
223 |
taccgacacatcgccatatgagctttctgctattcggaac |
262 |
Q |
| |
|
||||||||| || || ||||||||||||||| || ||||| |
|
|
| T |
39667303 |
taccgacacctcaccttatgagctttctgctgttaggaac |
39667264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 37962663 - 37962599
Alignment:
| Q |
29 |
tacttcgagcggggcaaccttgatatattcagtggtagaggtccttgtttggatggacctgtttg |
93 |
Q |
| |
|
|||||||| || || ||||||||||| |||||||| ||||| |||||||| || ||||| ||||| |
|
|
| T |
37962663 |
tacttcgaacgtggtaaccttgatattttcagtggaagaggaccttgtttagaaggacccgtttg |
37962599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University