View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13601_high_12 (Length: 224)
Name: NF13601_high_12
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 42179953 - 42179811
Alignment:
| Q |
19 |
gatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttggtttgttttatcaaactttgatta |
118 |
Q |
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| T |
42179953 |
gatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttggtttgttttatcaaactttgatta |
42179854 |
T |
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| Q |
119 |
tctataactaggttgttcaaatccaaaccgattcaaattaaaa |
161 |
Q |
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| T |
42179853 |
tctataactaagttgttcaaatccaaaccgattcaaattaaaa |
42179811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 42146684 - 42146609
Alignment:
| Q |
19 |
gatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttg |
94 |
Q |
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| T |
42146684 |
gatagcatccttaagattgtcgaagaagacaatgagaagtttctcagaaaacttagagaccgacaagacaggtttg |
42146609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 42158979 - 42158904
Alignment:
| Q |
19 |
gatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttg |
94 |
Q |
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| T |
42158979 |
gatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttg |
42158904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 40619887 - 40619850
Alignment:
| Q |
132 |
tgttcaaatccaaaccgattcaaattaaaaccggaaac |
169 |
Q |
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| T |
40619887 |
tgttcaaatccaaaccgatccaaattaaaaccggaaac |
40619850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 12291543 - 12291511
Alignment:
| Q |
132 |
tgttcaaatccaaaccgattcaaattaaaaccg |
164 |
Q |
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| T |
12291543 |
tgttcaaatccaaaccgattcaaaataaaaccg |
12291511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 7004605 - 7004637
Alignment:
| Q |
132 |
tgttcaaatccaaaccgattcaaattaaaaccg |
164 |
Q |
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| T |
7004605 |
tgttcaaatccaaatcgattcaaattaaaaccg |
7004637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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