View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13601_high_6 (Length: 340)

Name: NF13601_high_6
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13601_high_6
NF13601_high_6
[»] chr8 (3 HSPs)
chr8 (23-172)||(42025181-42025330)
chr8 (162-279)||(34924495-34924612)
chr8 (162-258)||(14112111-14112207)
[»] chr4 (1 HSPs)
chr4 (162-279)||(41223416-41223533)
[»] chr1 (1 HSPs)
chr1 (162-279)||(32573243-32573360)
[»] scaffold0039 (1 HSPs)
scaffold0039 (162-279)||(57174-57291)
[»] chr7 (1 HSPs)
chr7 (164-279)||(19847979-19848094)
[»] chr2 (1 HSPs)
chr2 (23-68)||(7444617-7444662)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 42025330 - 42025181
Alignment:
Q  23 aataataaaattacaactttatcccaattttggcacgcaccattcccannnnnnnccttcacttcttattccaacttgccttcatattcatcttcactgt 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||| ||||||||||||||||||||||||    
T  42025330 aataataaaattacaactttattccaattttggcacgcaccattcccatttttttccctcacttcttattccaacctgccttcatattcatcttcactgt 42025231  T
Q  123 tcatcctgccacttcttttttgcaactctccatagtaaatcatatttctt 172  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42025230 tcatcctgccacttcttttttgcaactctccaaagtaaatcatatttctt 42025181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 34924612 - 34924495
Alignment:
Q  162 tcatatttcttcatcttcatatttgatgcttcttttagtttctgaaccaagatttttattgttacttcttgttatttctgaatccaaatttcttcttctt 261  Q
    |||||||||||||||||||||||||||||||||  || | | ||||||||||||| |||||||| |||||||||||| |||| ||| |||||||| ||||    
T  34924612 tcatatttcttcatcttcatatttgatgcttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcatctt 34924513  T
Q  262 ttccctaattaattgtga 279  Q
    || || ||||||||||||    
T  34924512 tttccaaattaattgtga 34924495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 14112207 - 14112111
Alignment:
Q  162 tcatatttcttcatcttcatatttgatgcttcttttagtttctgaaccaagatttttattgttacttcttgttatttctgaatccaaatttcttctt 258  Q
    ||||||||||||||||||||||||||||||||   || | | ||||||||||||| |||||||| |||||||||||| |||| ||| ||||||||||    
T  14112207 tcatatttcttcatcttcatatttgatgcttcaactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttctt 14112111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 41223533 - 41223416
Alignment:
Q  162 tcatatttcttcatcttcatatttgatgcttcttttagtttctgaaccaagatttttattgttacttcttgttatttctgaatccaaatttcttcttctt 261  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||    
T  41223533 tcatatttcttcatcttcatatttgatgcttcttctaatttttgaaccaagatttctattgttatttcttgttatttatgaacccaaatttcttcttctt 41223434  T
Q  262 ttccctaattaattgtga 279  Q
    || || ||||||||||||    
T  41223433 tttccaaattaattgtga 41223416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 32573243 - 32573360
Alignment:
Q  162 tcatatttcttcatcttcatatttgatgcttcttttagtttctgaaccaagatttttattgttacttcttgttatttctgaatccaaatttcttcttctt 261  Q
    |||||||||||||||||||||||||||||||||  || | | ||||||||||||| |||||||| |||||||||||| |||| ||| |||||||||||||    
T  32573243 tcatatttcttcatcttcatatttgatgcttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcttctt 32573342  T
Q  262 ttccctaattaattgtga 279  Q
    || || ||||||||||||    
T  32573343 tttccaaattaattgtga 32573360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 57174 - 57291
Alignment:
Q  162 tcatatttcttcatcttcatatttgatgcttcttttagtttctgaaccaagatttttattgttacttcttgttatttctgaatccaaatttcttcttctt 261  Q
    |||||||||||||||||||||||||||||||||  || | | ||||||||||||| |||||||| |||||||||||| |||| ||| |||||||| ||||    
T  57174 tcatatttcttcatcttcatatttgatgcttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcatctt 57273  T
Q  262 ttccctaattaattgtga 279  Q
    || || ||||||||||||    
T  57274 tttccaaattaattgtga 57291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 279
Target Start/End: Original strand, 19847979 - 19848094
Alignment:
Q  164 atatttcttcatcttcatatttgatgcttcttttagtttctgaaccaagatttttattgttacttcttgttatttctgaatccaaatttcttcttctttt 263  Q
    ||||||||||||||||||||||||| |||||  || | | ||||||||||||| |||||||| |||||||||||| |||| ||| |||||||||||||||    
T  19847979 atatttcttcatcttcatatttgatacttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcttctttt 19848078  T
Q  264 ccctaattaattgtga 279  Q
     || ||||||||||||    
T  19848079 tccaaattaattgtga 19848094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 7444662 - 7444617
Alignment:
Q  23 aataataaaattacaactttatcccaattttggcacgcaccattcc 68  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7444662 aataataaaattacaactttatcccaattttggcacgcatcattcc 7444617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University