View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13601_high_9 (Length: 330)
Name: NF13601_high_9
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 30901412 - 30901712
Alignment:
| Q |
18 |
atatatgtcattaactaatcaattttgtatcttgttgattacattggaaatataaaacatctgttacttgcatgccctatcattaattgattatcactgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30901412 |
atatatgtcattaactaatcaattttgtatcttgttgattacattggaaatataaaacatctgttacttgcatgccctatcattaattgattatcactgg |
30901511 |
T |
|
| Q |
118 |
ttttccttttgtttttgtttcttcaagataatggaaaagtctttagctggggatggaacaaatatggacaggtgagtatattgcgctgccatttttattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30901512 |
ttttccttttgtttttgtttcttcaagataatggaaaagtctttagctggggatggaacaaatatggacaggtgagtatattgcgctgccatttttattt |
30901611 |
T |
|
| Q |
218 |
atctcctattttaaaaatgaatattattgaaagttctacctgacatacttatttaagggataatcttgaagtttggtgaattaatggcaatatattcttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30901612 |
atctcctattttaaaaatgaatattattgaaagttctacctgacatacttatttaagggataatcttgaagtttgttgaattaatggcaatatattcttg |
30901711 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
30901712 |
g |
30901712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University