View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13601_low_1 (Length: 801)
Name: NF13601_low_1
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 760; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 18 - 785
Target Start/End: Original strand, 2489204 - 2489971
Alignment:
| Q |
18 |
atgtatcatcccgaataaagaaaaaagaggaaggagctgctgtgaaaccagaaggaaagactgaaagtcctgctcctgctgtaaagactgaagcagaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2489204 |
atgtatcatcccgaataaagaaaaaagaggaaggagctgctgtgaaaccagaaggaaagactgaaagtcctgcacctgctgtaaagactgaagcagaaat |
2489303 |
T |
|
| Q |
118 |
accaacttcagtgcgcaaaactgatggtgaaaattcagttcctgcatccaaagctgtaagccttctctgttttctaattattagatatattacaatttaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2489304 |
accaacttcagtgcgcaaaactgatggtgaaaattcagttcctgcatccaaagctgtaagccttctctgttttctaattgttagatatattacaatttaa |
2489403 |
T |
|
| Q |
218 |
ttttaatagtgttgaaatcataccgcaagtggcttattcaaacacaacacaatctcttcacttgcaggaagttcctgataatgagtttgagaagcgaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489404 |
ttttaatagtgttgaaatcataccgcaagtggcttattcaaacacaacacaatctcttcacttgcaggaagttcctgataatgagtttgagaagcgaata |
2489503 |
T |
|
| Q |
318 |
agacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattcacttcaagaactagtaatgcttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489504 |
agacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattcacttcaagaactagtaatgcttc |
2489603 |
T |
|
| Q |
418 |
cccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489604 |
cccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaa |
2489703 |
T |
|
| Q |
518 |
ggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagcttta |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489704 |
ggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagcttta |
2489803 |
T |
|
| Q |
618 |
ttcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489804 |
ttcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgc |
2489903 |
T |
|
| Q |
718 |
ggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattctt |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489904 |
ggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattctt |
2489971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 274 - 751
Target Start/End: Complemental strand, 41591529 - 41591049
Alignment:
| Q |
274 |
ttcacttgcaggaagttcct---gataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattgg |
370 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||| || |||||||| || ||||| |
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|
| T |
41591529 |
ttcacttgcaggaagttcctcctgataatgaatttgagaagcgaataaggcctgaagttataccagcaaatgagattgatgtcacattctctgatattgg |
41591430 |
T |
|
| Q |
371 |
tgccttagacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagagga |
470 |
Q |
| |
|
||||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||| | ||| |
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|
| T |
41591429 |
tgccttagaagaaacaaaagaatcacttcaagaactagtaatgcttcctcttcgaaggccagaccttttcactggaggacttctaaaaccatgtcgggga |
41591330 |
T |
|
| Q |
471 |
atattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctacca |
570 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41591329 |
atattgctatttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgtgtccatgtctacca |
41591230 |
T |
|
| Q |
571 |
tcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttga |
670 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
41591229 |
tcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtcgatgaggttga |
41591130 |
T |
|
| Q |
671 |
cagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattggga |
751 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
41591129 |
tagcatgcttgggcaacgaacaagagttggggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattggga |
41591049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 278 - 757
Target Start/End: Complemental strand, 11094921 - 11094442
Alignment:
| Q |
278 |
cttgcaggaagttcctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgcctta |
377 |
Q |
| |
|
||||||||||||||| || || || || ||||||||||| ||||||||||| ||||| |||||||| || || || |||||| | || || ||||| ||| |
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|
| T |
11094921 |
cttgcaggaagttcccgacaacgaattcgagaagcgaattagacctgaagttatccctgcaaatgagataggtgttacattcgcagatatcggtgcatta |
11094822 |
T |
|
| Q |
378 |
gacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgc |
477 |
Q |
| |
|
|| |||| ||||| || |||||||| |||||||||||||||||| |||| ||||||||||| |||| || ||||||||||| |||||||| ||||| | |
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|
| T |
11094821 |
gatgagataaaagaatcgcttcaagagctagtaatgcttccccttagaagaccagaccttttcaaaggtggacttctaaagccatgtagaggtatattac |
11094722 |
T |
|
| Q |
478 |
tatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttc |
577 |
Q |
| |
|
| || || |||||||| || |||||||||||||| |||||||| ||||| || || || ||||||||||||||||| || || ||||| || |||||||| |
|
|
| T |
11094721 |
ttttcggtccacctggtaccggaaaaacaatgctagcaaaggcgattgcgaatgaagcaggagcaagtttcattaacgtctcgatgtccacgatcacttc |
11094622 |
T |
|
| Q |
578 |
taaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatg |
677 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||||||| |||||||| ||| |
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|
| T |
11094621 |
aaaatggttcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagttgacagcatg |
11094522 |
T |
|
| Q |
678 |
cttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
757 |
Q |
| |
|
|| || ||||| || ||||| || |||||||| |||||| |||| || || |||||||||||| | ||||||||||||| |
|
|
| T |
11094521 |
ctcggtcagcgtactagagtcggagaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 577
Target Start/End: Complemental strand, 39697136 - 39697027
Alignment:
| Q |
468 |
ggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtcta |
567 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||||||||||||| |||||||| | |||| ||| |||||||||| ||||||||| | |||||||||| |
|
|
| T |
39697136 |
ggaatattgctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggtagcaaccgaagctggagcaaatttcattaacatctccatgtcta |
39697037 |
T |
|
| Q |
568 |
ccatcacttc |
577 |
Q |
| |
|
||| ||||| |
|
|
| T |
39697036 |
gcattacttc |
39697027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 556
Target Start/End: Original strand, 44926625 - 44926730
Alignment:
| Q |
451 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
550 |
Q |
| |
|
|||| ||||| |||| ||| |||| || ||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |
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|
| T |
44926625 |
ttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcat |
44926724 |
T |
|
| Q |
551 |
taatgt |
556 |
Q |
| |
|
||||| |
|
|
| T |
44926725 |
caatgt |
44926730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 556
Target Start/End: Original strand, 44935065 - 44935170
Alignment:
| Q |
451 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
550 |
Q |
| |
|
|||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44935065 |
ttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcat |
44935164 |
T |
|
| Q |
551 |
taatgt |
556 |
Q |
| |
|
||||| |
|
|
| T |
44935165 |
caatgt |
44935170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 45988450 - 45988556
Alignment:
| Q |
450 |
cttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttca |
549 |
Q |
| |
|
||||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| || || ||||||||||||||| |
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|
| T |
45988450 |
cttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttca |
45988549 |
T |
|
| Q |
550 |
ttaatgt |
556 |
Q |
| |
|
| ||||| |
|
|
| T |
45988550 |
tcaatgt |
45988556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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