View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13601_low_12 (Length: 264)
Name: NF13601_low_12
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_low_12 |
 |  |
|
| [»] chr7 (6 HSPs) |
 |  |
|
| [»] scaffold0340 (1 HSPs) |
 |  |  |
|
| [»] scaffold0113 (1 HSPs) |
 |  |  |
|
| [»] scaffold0343 (1 HSPs) |
 |  |  |
|
| [»] scaffold0538 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 5741005 - 5741256
Alignment:
| Q |
13 |
aatatcccaccttaacctaagtcatgttacaaccgtgcaagaccttaaagcgttcccaaaccaagcaattcttaggtgttttgatgtaattcaatgtaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5741005 |
aatatcccaccttaacctaagtcatgttacaaccctgcaagaccttaaagcgttcccaaaccaagcagttcttaggtgttttgatgtaattcaatgtaaa |
5741104 |
T |
 |
| Q |
113 |
atcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaagacattacaaagagaagaaatta |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5741105 |
atcatacaaatcggcaaagcaaagcatctcaagagggtttgggaagataatggatgatgattcaagaggtctcgaaagacattgcaaagagaagaaatta |
5741204 |
T |
 |
| Q |
213 |
tattccaagttacgagacaagtttcaaggaagaaaacacacagaaagatcaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5741205 |
tattccaagttacgagacaagtttcaaggaagaaaacacacagaaagatcaa |
5741256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 2469355 - 2469174
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatga |
169 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||| ||| || || |||| | ||||||| |
|
|
| T |
2469355 |
aaaccaagcagttcttaggtgttttgatgtaattcaatgcaaaatcatgcaaatcgacaaagtaaagcatctcaaaaggattagggaagaaagtggatga |
2469256 |
T |
 |
| Q |
170 |
tgattcaagaggtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
| |||||||||| | || |||||||||| || ||||||| | |||||||| | ||| || ||| ||| |||||||||| |
|
|
| T |
2469255 |
ttattcaagaggcatgtgaacacattacaaataggagaaattcttttccaagtctcaagaaaaattttaagaaagaaaacac |
2469174 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 14968795 - 14968926
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||| ||||||||||||| ||| |||| ||||||| |||| |||| ||| ||||||| |||| |||| || |||||||||||||||||| ||| |||| |
|
|
| T |
14968795 |
tttttatgtaattcaatgcaaagtcatgcaaatcgacaaagcaaaccattacaagaggaattgggaagacaacggatgatgattcaagaggcctccaaag |
14968894 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagt |
222 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||| |
|
|
| T |
14968895 |
acattacaaagaggagaaattctattacaagt |
14968926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 15398271 - 15398402
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||| ||||||||||||| ||| |||| ||||||| |||| |||| ||| ||||||| |||| |||| || |||||||||||||||||| ||| |||| |
|
|
| T |
15398271 |
tttttatgtaattcaatgcaaagtcatgcaaatcgacaaagcaaaccattacaagaggaattgggaagacaacggatgatgattcaagaggcctccaaag |
15398370 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagt |
222 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||| |
|
|
| T |
15398371 |
acattacaaagaggagaaattctattacaagt |
15398402 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 21228381 - 21228274
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| |||||||||||| |||| | |||| ||| | ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
21228381 |
ttttgatgtaattcaaggaaaaatcatgcaaaacggcaaaacaaaatatct-atgaggatttaggaaggcaatggatggtgattcaagaggtctcgaaag |
21228283 |
T |
 |
| Q |
191 |
acattacaa |
199 |
Q |
| |
|
|||| |||| |
|
|
| T |
21228282 |
acatcacaa |
21228274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 10479572 - 10479677
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |||||||||| || ||| |||| |||| |||| || | ||||||||| |||| ||| |
|
|
| T |
10479572 |
ttttgatgtaattcaaggtaaaatcatgcaaatcaccaaatcaaagcatcttaaaaggatttgagaagacaatgaataaagattcaagatatctctgaag |
10479671 |
T |
 |
| Q |
191 |
acatta |
196 |
Q |
| |
|
|||||| |
|
|
| T |
10479672 |
acatta |
10479677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 261
Target Start/End: Complemental strand, 16856 - 16687
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||| ||| | |||| | || |||| ||||||||| | ||| |||| |
|
|
| T |
16856 |
ttttgatgtaattcaatgcaaaatcatgcaaatcagcaaagcaaagcatctcaagaggattttggaagaca-tgaatgaagattcaagaagcctctaaag |
16758 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacacacagaaagat |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||| || |||||| |
|
|
| T |
16757 |
acattacaaagagaagaaattatattctgagtcccaagacaagtttcaatgaagaaaacactcaaaaagat |
16687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 27305649 - 27305469
Alignment:
| Q |
81 |
ttcttaggtgtttt-gatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaaga |
179 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||| |||||| ||||| ||||||||||||||||| ||| | || | |||| ||||||||| |||| |
|
|
| T |
27305649 |
ttcttaggtgtttttgatgtaattcaatacaaattcatgcaaatcagcaaagcaaagcatctcaagaggattttggaaaacaatgaatgatgatttaaga |
27305550 |
T |
 |
| Q |
180 |
ggtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacacacagaaaga |
260 |
Q |
| |
|
|| || |||||||||||||||| | ||||| |||| ||||| | || |||||||||||||||||||||| |||||||| |
|
|
| T |
27305549 |
ggcttcttaagacattacaaagaggataaattctatttcaagtcccaaggcaagtttcaaggaagaaaacactcagaaaga |
27305469 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 12656435 - 12656594
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
||||||||||||| | || |||||||| |||||| ||||||||||||| ||| ||| ||| | |||| |||||||||||||||||||| || ||| |
|
|
| T |
12656435 |
ttttgatgtaattgactgcaaaatcatgcaaatcagcaaaacaaagcaactcttgagaatttaggaagacaatggatgatgattcaagagtcatctgaag |
12656534 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaaca |
250 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
12656535 |
acattacaaaatggagaaattatattccaagccacaagacaagttttaaggaagaaaaca |
12656594 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 17976174 - 17976120
Alignment:
| Q |
76 |
agcaattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaa |
130 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
17976174 |
agcatttcttgggtgttttgatgtaattcaataagaaatcatgcaaatcggcaaa |
17976120 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 26047320 - 26047451
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||| ||||| |||| |||||||||||||||||||| ||| |||| |
|
|
| T |
26047320 |
ttttgatgtaattcaatgcaaaaacatacaaatcggcaaagtagagcatctcaaaaggatttgggaagacaatggatgatgattcaagagacctctaaag |
26047419 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagt |
222 |
Q |
| |
|
||||||||||||| |||| | |||| |||||| |
|
|
| T |
26047420 |
acattacaaagaggagaattcatatcccaagt |
26047451 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 26052501 - 26052632
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||| ||||| |||| |||||||||||||||||||| ||| |||| |
|
|
| T |
26052501 |
ttttgatgtaattcaatgcaaaaacatacaaatcggcaaagtagagcatctcaaaaggatttgggaagacaatggatgatgattcaagagacctctaaag |
26052600 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagt |
222 |
Q |
| |
|
||||||||||||| |||| | |||| |||||| |
|
|
| T |
26052601 |
acattacaaagaggagaattcatatcccaagt |
26052632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 21166658 - 21166818
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||||| |||| |||||| |||| ||| |||||| ||||||||| ||||||||||| ||| ||| |
|
|
| T |
21166658 |
ttttgatgtaattcaatgcaaaatcgtgtaaatcggcaaagcaaatcatctcttgaggattttgaaagacaatggatgaagattcaagaggcctccgaag |
21166757 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
||||||||||| |||||| ||| |||||| | |||||||||| |||||||||||||| |
|
|
| T |
21166758 |
acattacaaagtagtgaaattctatcccaagtctcaagacaagttttaaggaagaaaacac |
21166818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 19084039 - 19084208
Alignment:
| Q |
79 |
aattcttaggtgtttt-gatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaa |
177 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || | |||| |||| |||| |||| |||| || |
|
|
| T |
19084039 |
aattcttagatgtttttgatgtaattcaatgcaaaatcatgcaaattggcaaaacaaagcacatcgtgaagaattgggaagacaatgaatgaagattaaa |
19084138 |
T |
 |
| Q |
178 |
gaggtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaa |
247 |
Q |
| |
|
| || || |||||||||||||| | |||| | |||||||||| | ||||||||||||||||||||| |
|
|
| T |
19084139 |
gcggcctatgaagacattacaaagtggagaactactattccaagtgccaagacaagtttcaaggaagaaa |
19084208 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 20314226 - 20314280
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtg-ttttgatgtaattcaatgtaaaatcatacaaat |
123 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
20314226 |
aaaccaagcaattcttaggtgtttttgatgtaattaaatgtaaaatcatgcaaat |
20314280 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 17380814 - 17380751
Alignment:
| Q |
188 |
aagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||| | |||||||||||| | |||||||||| |
|
|
| T |
17380814 |
aagacattacaaagaggagaaattctatttcaagtcccaagacaagtttcatgaaagaaaacac |
17380751 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 4611671 - 4611725
Alignment:
| Q |
71 |
aaccaagcaattcttaggtg-ttttgatgtaattcaatgtaaaatcatacaaatc |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || ||||| || |||||| |
|
|
| T |
4611671 |
aaccaagcaattcttaggtgtttttgatgtaattcattgcaaaataatgcaaatc |
4611725 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 17661886 - 17661821
Alignment:
| Q |
76 |
agcaattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatct |
141 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||| ||||| |
|
|
| T |
17661886 |
agcaattctagggtgttttgatgtaattcaagaagaaatcatgcaaatcggcataacaaaacatct |
17661821 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 20319970 - 20320033
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgtttt---gatgtaattcaatgtaaaatcatacaaatcggcaaa |
130 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
20319970 |
aaaccaagaaattcttacgtgtttttttgatgtaattcaatgtaaagtcatgcaattcggcaaa |
20320033 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 27747708 - 27747876
Alignment:
| Q |
81 |
ttcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagag |
180 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| | ||| ||||| |||| |||| ||| ||||||||||| |
|
|
| T |
27747708 |
ttcttaggtgtttt--tgtaattcaatgtaaaatcatgcaattcggcaaaacaaagcatcttataaggatttgggaagacaatgaatgttgattcaagag |
27747805 |
T |
 |
| Q |
181 |
gtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
| || ||||||||| |||| | ||| ||| |||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
27747806 |
gcctttgaagacattataaagtggagacattctattccaagtctctagacaagtttcaagaaagaaaacac |
27747876 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 9789072 - 9789192
Alignment:
| Q |
124 |
cggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaagacattacaaagagaagaaattatattccaagtt |
223 |
Q |
| |
|
||||||||||||| | |||| || | ||||||||| |||| ||| ||||||||||||||| |||||||||||| | ||||||| |||||||||| |
|
|
| T |
9789072 |
cggcaaaacaaagtacctcatgaagaattggaaagacaatgaatgtagattcaagaggtctctgaagacattacaagttggagaaattctattccaagtc |
9789171 |
T |
 |
| Q |
224 |
acgagacaagtttcaaggaag |
244 |
Q |
| |
|
| |||||||||| ||||||| |
|
|
| T |
9789172 |
ccaagacaagttttaaggaag |
9789192 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 27871209 - 27871098
Alignment:
| Q |
88 |
gtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcga |
187 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||||| |||| ||| | |||| |||||||||| ||| | || ||||||||||| || | |
|
|
| T |
27871209 |
gtgttttgatgtaattcaaggagaaatcatgcaaatcggcaaagcaaaacatttaaaga--ctttggaaagaccatgaacgaagattcaagaggccttgg |
27871112 |
T |
 |
| Q |
188 |
aagacattacaaag |
201 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
27871111 |
aagacattataaag |
27871098 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 34369252 - 34369204
Alignment:
| Q |
87 |
ggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaa |
135 |
Q |
| |
|
||||||||||| |||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
34369252 |
ggtgttttgatataattcaagatgaaatcatgcaaatcggcaaaacaaa |
34369204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 260
Target Start/End: Original strand, 29230304 - 29230494
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatga |
169 |
Q |
| |
|
||||||| || ||||||||| | ||||||||||||||| ||||| || ||||| | |||| |||| ||||||||||| ||||| |||| ||||||||| |
|
|
| T |
29230304 |
aaaccaaacagttcttaggtttcatgatgtaattcaatgcaaaataatgcaaattgacaaatcaaatcatctcaagagaatttgggaagacaatggatga |
29230403 |
T |
 |
| Q |
170 |
tgattcaagaggtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacacacagaaaga |
260 |
Q |
| |
|
|||||||| | | || |||||||||||||||||| ||||| || | | ||| | |||||||| ||||||||||||||| |||||||| |
|
|
| T |
29230404 |
tgattcaaaaagcatctgaagacattacaaagagaataaattctacttcgagtctcaggacaagttacaaggaagaaaacactcagaaaga |
29230494 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 23600489 - 23600620
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||| ||||||||| | |||||||| |||||||||||| |||||||||| || || ||||| |||| ||| |||| ||||||| ||| | ||| |
|
|
| T |
23600489 |
ttttgaggtaattcaaggcaaaatcatgcaaatcggcaaagcaaagcatcttaaaagaatttgggaagacaattaatgaagattcaaaaggcatatgaag |
23600588 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagt |
222 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |
|
|
| T |
23600589 |
acattacaaagaggagaaattctattccaagt |
23600620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 26214013 - 26214149
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtg-ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatg |
168 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||| | |||||| | |||||||||||| ||||| |||| || | ||| | |||| |||| ||| |
|
|
| T |
26214013 |
aaaccaagcaattctagggtggttttgatgaaattcaaagcaaaatcgtgcaaatcggcaaagcaaagtatcttgtgaagatttaggaagacaatgaatg |
26214112 |
T |
 |
| Q |
169 |
atgattcaagaggtctcgaaagacattacaaagagaa |
205 |
Q |
| |
|
| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
26214113 |
aagattcaagaggtctctgaagacattacaaggagaa |
26214149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 12586019 - 12586149
Alignment:
| Q |
113 |
atcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaagacattacaaagagaagaaatta |
212 |
Q |
| |
|
||||| |||||||||||| |||||||||| | ||| ||||| |||| |||| || | ||||||||||| || |||| ||||||| || | |||||| |
|
|
| T |
12586019 |
atcatgcaaatcggcaaatcaaagcatcttatgagaatttgggaagacaatgaatcaagattcaagaggcctatgaagatattacaagaagcaaaaatta |
12586118 |
T |
 |
| Q |
213 |
tattccaagttacgagacaagtttcaaggaa |
243 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |
|
|
| T |
12586119 |
tattccaagttccaagacaagtttcatggaa |
12586149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 15550998 - 15550929
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtg-ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagca |
138 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||| | || ||||||| |
|
|
| T |
15550998 |
aaaccaagcaattcttaggtgtttttgatgtaattcaatgcaaaattatgcaaatcgacgaagcaaagca |
15550929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 20723522 - 20723391
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaag-catctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaa |
189 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| | ||| |||| ||||||| ||||| |||| |||| || | | || |||||| || || |
|
|
| T |
20723522 |
ttttgatgtaattcaagataaaatcatgcaaatcggcaaagccaagccatc-caagaggatttgggaagacaatgaataaagttttaagaggcttctgaa |
20723424 |
T |
 |
| Q |
190 |
gacattacaaagagaagaaattatattccaagt |
222 |
Q |
| |
|
|||||||||| || ||||||||| |||||||| |
|
|
| T |
20723423 |
gacattacaagaaggagaaattatgttccaagt |
20723391 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 35019357 - 35019517
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||| ||||||||| | ||||||| |||| | |||| ||||||||| |||| |||| ||||||| | |||| |||||||| | ||| ||| |
|
|
| T |
35019357 |
ttttgacgtaattcaaggccaaatcatggaaattgacaaagcaaagcatcatgcgaggatttgagaagataacgaatgaaaattcaagacgcctctaaaa |
35019456 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
35019457 |
acatttcaaagaggggaaattctattccaagttccatgacaagtttcatggaagaaaacac |
35019517 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 8323055 - 8323234
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgtt-ttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatg |
168 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| | |||||||||| | | |||| |||| || |||| || ||||||| |||||||| |
|
|
| T |
8323055 |
aaaccaagcaattcttaggtgttattgaagtaattcactataaaatcatatgatctgacaaaccaaatcacctcatgaaaaattggaaaatcaatggatg |
8323154 |
T |
 |
| Q |
169 |
atgattcaagaggtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaa |
248 |
Q |
| |
|
| ||||| ||||| ||| ||||||||| |||| | ||||||| |||| ||||| | |||||||||| |||||| |||| |
|
|
| T |
8323155 |
aagattcgagaggcctctcaagacattagaaagtggagaaattctatttcaagtcccaagacaagttttaaggaacaaaa |
8323234 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 24968841 - 24968894
Alignment:
| Q |
65 |
ttcccaaaccaagcaattcttaggtgttt-tgatgtaattcaatgtaaaatcat |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||| || |||||||| |
|
|
| T |
24968841 |
ttcctaaaccaagcaattcttaggtgtttgtgatgtacttcattgaaaaatcat |
24968894 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 10828457 - 10828325
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgtttt-gatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatg |
168 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||| ||||| ||||||| |||||||||||| ||||| | |||| | || | ||| |||| |||| ||| |
|
|
| T |
10828457 |
aaaccaagcagttcttagatgtttttgatgtaatccaatgcaaaatcaggcaaatcggcaaagcaaagtacctcatggggatatgggaagacaatgaatg |
10828358 |
T |
 |
| Q |
169 |
atgattcaagaggtctcgaaagacattacaaag |
201 |
Q |
| |
|
| |||||||||| |||| ||||||||||||||| |
|
|
| T |
10828357 |
aagattcaagagatctctaaagacattacaaag |
10828325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 21448811 - 21448955
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgtttt-gatgtaattcaatgtaaaatcatacaaatcggcaaaacaaa--gcatctcaagagggtttggaaagataatgga |
166 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||| | ||| |||| ||||||||||||| ||| |||||||| ||| ||||| |||| |||||| |
|
|
| T |
21448811 |
aaaccaataaattcttgggtgtttttgatgtaattcagagcaaagtcatgcaaatcggcaaaaaaaaaagcatctcatgagaatttgggaagacaatgga |
21448910 |
T |
 |
| Q |
167 |
tgatgattcaagaggtctcgaaagacattacaaagagaagaaatt |
211 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||||||||||||||| |
|
|
| T |
21448911 |
tgatgattcaaaaggcttataaagatattacaaagagaagaaatt |
21448955 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 27912001 - 27911942
Alignment:
| Q |
76 |
agcaattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaa |
135 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
27912001 |
agcaattctagggtgttttgatgtaattcaagaaaaaatcatgcaaatcggcaaagcaaa |
27911942 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 31260871 - 31260970
Alignment:
| Q |
152 |
tggaaagataatggatgatgattcaagaggtctcgaaagacattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
|||||||||| | |||| ||||||||||| ||| ||||||||||||| || ||||||| |||| ||| || | ||||||||| | |||||||||||| |
|
|
| T |
31260871 |
tggaaagatagcgaatgaagattcaagaggcctctaaagacattacaagaaggagaaattctatttcaaattccaagacaagttatatggaagaaaacac |
31260970 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 6577 - 6392
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgttt-tgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatg |
168 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||||| |||||||| |||||| |||| |||||||||| || ||| ||||| |||| |||| ||| |
|
|
| T |
6577 |
aaaccatgcagttcttaggtgtttctgatgtaattcaagtcaaaatcatgaaaatcgacaaagcaaagcatcttaaaaggatttgggaagacaatgaatg |
6478 |
T |
 |
| Q |
169 |
atgattcaagaggtctcgaaagacattacaaagagaagaaat---tatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
| | ||||||||| | |||||||||||| |||| |||| | | |||| ||||| | |||||||||||| |||||||||||| |
|
|
| T |
6477 |
aagtttcaagaggcatgtaaagacattacatagaggagaattctatttatttcaagtaccaagacaagtttcatggaagaaaacac |
6392 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 32416006 - 32416117
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||||||| ||| | || | ||||| |||| |||| || | ||||||||||||||| ||| |
|
|
| T |
32416006 |
ttttgatgtaattcaaggcaaaatcatgcaaatcggcaaaacaaaacattttgtgaagatttgggaagacaatgaattaagattcaagaggtctcttaag |
32416105 |
T |
 |
| Q |
191 |
acattacaaaga |
202 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32416106 |
acattacaaaga |
32416117 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 20680500 - 20680411
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagagg |
181 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||||| |||| |||||||||||| |||| ||| ||| |||||||||| |||||| |
|
|
| T |
20680500 |
ttttgatgtaattcaatgtgaa-tcatacaaataggcaaagcaaaacatctcaagaggatttgtgcagacaatagatgatgattaaagagg |
20680411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 15492319 - 15492387
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaaga |
159 |
Q |
| |
|
|||| ||||||||||| |||||| ||| |||||||||||| |||||||||| |||||| ||||| |||| |
|
|
| T |
15492319 |
tttttatgtaattcaaggtaaaagcatgcaaatcggcaaagcaaagcatcttaagaggatttgggaaga |
15492387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 23032590 - 23032476
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||||| ||| |||| ||||| | ||| ||||| |||| || | |||| |||||||||| ||| ||| |
|
|
| T |
23032590 |
tttttatgtaattcaaggcaaaatcatacaaatcggaaaagcaaaacatcttataaggatttgggaagacaacgaatgaagattcaagagacctctgaag |
23032491 |
T |
 |
| Q |
191 |
acattacaaagagaa |
205 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
23032490 |
acattacaaggagaa |
23032476 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 17336488 - 17336545
Alignment:
| Q |
78 |
caattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaa |
135 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
17336488 |
caattctagggtgttttgatgtaattcaagaataaatcatgcaaatcggcaaaacaaa |
17336545 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 25779131 - 25779291
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagaggtctcgaaag |
190 |
Q |
| |
|
|||| ||| |||||||| ||||| || ||||||||||||||||||||||||| ||| ||| |||| ||| ||| | |||| |||||||||| ||| |
|
|
| T |
25779131 |
tttttatgcaattcaatacaaaattatgcaaatcggcaaaacaaagcatctcatgagaatttaagaagacaatagataaagatttaagaggtctctgaag |
25779230 |
T |
 |
| Q |
191 |
acattacaaagagaagaaattatattccaagttacgagacaagtttcaaggaagaaaacac |
251 |
Q |
| |
|
||||||||||| | ||||| ||||||| || | ||||||||||||| |||||||||| |
|
|
| T |
25779231 |
acattacaaagttgataaattttattccaggtcgcacgacaagtttcaagaaagaaaacac |
25779291 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 30510707 - 30510654
Alignment:
| Q |
128 |
aaaacaaagcatctcaagagggtttggaaagataatggatgatgattcaagagg |
181 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| ||||||| | ||||||||||| |
|
|
| T |
30510707 |
aaaacaaagcatctcatgagaatttggaaagacaatggataaagattcaagagg |
30510654 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 3002993 - 3002929
Alignment:
| Q |
76 |
agcaattcttaggtgttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatc |
140 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
3002993 |
agcaattctacggtgttttgatgtaattcaagaagaaatcatgcaaatcggcaaagcaaaacatc |
3002929 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 20337881 - 20337929
Alignment:
| Q |
14 |
atatcccaccttaacctaagtcatgttacaaccgtgcaagaccttaaag |
62 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| || ||||||| |||| |
|
|
| T |
20337881 |
atatcccaccttaacttaagtcatgttataaccttgaaagacctcaaag |
20337929 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 13594 - 13526
Alignment:
| Q |
91 |
ttttgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatctcaagagggtttggaaaga |
159 |
Q |
| |
|
||||||||| ||||| || | |||||| |||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
13594 |
ttttgatgttattcattgcacaatcatgcaaatcggaaaaacaaagcatctcaagaggattttgaaaga |
13526 |
T |
 |
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Target: scaffold0538 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0538
Description:
Target: scaffold0538; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 2747 - 2819
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgttt-tgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatct |
141 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||| | |||||||| |||||||| ||| |||||||||| |
|
|
| T |
2747 |
aaaccaagcagttctagggtgtttatgatgtaattcaaggcaaaatcatgcaaatcggtaaagcaaagcatct |
2819 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0538; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 7103 - 7175
Alignment:
| Q |
70 |
aaaccaagcaattcttaggtgttt-tgatgtaattcaatgtaaaatcatacaaatcggcaaaacaaagcatct |
141 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||| | |||||||| |||||||| ||| |||||||||| |
|
|
| T |
7103 |
aaaccaagcagttctagggtgtttatgatgtaattcaaggcaaaatcatgcaaatcggtaaagcaaagcatct |
7175 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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