View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13601_low_4 (Length: 432)

Name: NF13601_low_4
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13601_low_4
NF13601_low_4
[»] chr5 (2 HSPs)
chr5 (187-422)||(18684468-18684706)
chr5 (82-115)||(38766815-38766848)
[»] chr7 (2 HSPs)
chr7 (27-114)||(23214920-23215007)
chr7 (91-140)||(2767160-2767209)
[»] chr2 (5 HSPs)
chr2 (28-115)||(15120247-15120334)
chr2 (30-140)||(41032876-41032986)
chr2 (78-140)||(41041991-41042053)
chr2 (79-115)||(39539713-39539749)
chr2 (80-140)||(40145491-40145551)
[»] chr1 (1 HSPs)
chr1 (30-109)||(5157142-5157221)
[»] chr8 (3 HSPs)
chr8 (71-140)||(4055578-4055647)
chr8 (28-109)||(29699343-29699422)
chr8 (30-115)||(39551130-39551215)
[»] chr6 (2 HSPs)
chr6 (173-224)||(32578031-32578083)
chr6 (50-140)||(34939783-34939873)
[»] chr3 (3 HSPs)
chr3 (28-130)||(22232882-22232983)
chr3 (28-113)||(50211801-50211886)
chr3 (30-90)||(20194954-20195014)
[»] chr4 (1 HSPs)
chr4 (27-103)||(9316601-9316677)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 187 - 422
Target Start/End: Complemental strand, 18684706 - 18684468
Alignment:
Q  187 gaaaacagtttgattatagaaatagcttatacataagccctaatgtttatcctaacagggctttctcactaaaaatgcaaaatattnnnnnnnnnnnn-- 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  18684706 gaaaacagtttgattatagaaatagcttatacataagccctaatgtttatcctaacagggctttctcactaaaaatgcaaaatattaaaaaaaaaaaaaa 18684607  T
Q  285 -tcccctgaaaatagttgcaaatagttggtggctgttttaacctatttttagtgaaaacatgatcaatttgattgacctaagcagcttaacctaaatttc 383  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18684606 atcccctgaaaatagttgcaaatagttggtggctgttttaacctatttttagtgaaaacatgatcaatttgattgacctaagcaacttaacctaaatttc 18684507  T
Q  384 atcctaaattttaattaaatttaaattcatttgatgatg 422  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  18684506 atcctaaattttaattaaatttaaattaatttgatgatg 18684468  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 38766815 - 38766848
Alignment:
Q  82 tttgtgagaatttatagaaacaacttataacatg 115  Q
    |||||||||| |||||||||||||||||||||||    
T  38766815 tttgtgagaacttatagaaacaacttataacatg 38766848  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 23215007 - 23214920
Alignment:
Q  27 atgtttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataacat 114  Q
    ||||||||||| ||||||||||||||||||  |  |||||||| || | | |||||||| ||||||||||  ||||||||||| ||||    
T  23215007 atgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 2767160 - 2767209
Alignment:
Q  91 atttatagaaacaacttataacatggccatcaatggttttcagcttattt 140  Q
    ||||||||||||||||||| ||||| |||||||  ||||||| |||||||    
T  2767160 atttatagaaacaacttattacatgtccatcaactgttttcaacttattt 2767209  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 15120334 - 15120247
Alignment:
Q  28 tgtttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataacatg 115  Q
    |||||||||| |||||||||| |||||||  |  ||||||||||||| || ||||||| ||||  |||| |||||||||||| |||||    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatg 15120247  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 41032876 - 41032986
Alignment:
Q  30 tttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataacatggccatcaatggttt 129  Q
    |||||||| ||||||||||  ||| ||  || |||||||| |||| | |||||||| ||||| ||||||||||||||| |  |||| | || | | ||||    
T  41032876 tttggattgacttatttgattttacctgcttgcataaacatttgtgatactgtttgagagaacttatagaaacaacttcttccatgtctataagttgttt 41032975  T
Q  130 tcagcttattt 140  Q
    |||||||||||    
T  41032976 tcagcttattt 41032986  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 41041991 - 41042053
Alignment:
Q  78 actgtttgtgagaatttatagaaacaacttataacatggccatcaatggttttcagcttattt 140  Q
    |||||||  ||||||||||||||||||||||| ||||| ||||||   ||||||| |||||||    
T  41041991 actgtttcagagaatttatagaaacaacttattacatgtccatcagctgttttcaacttattt 41042053  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 39539749 - 39539713
Alignment:
Q  79 ctgtttgtgagaatttatagaaacaacttataacatg 115  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  39539749 ctgtttgggagaatttatagaaacaacttatgacatg 39539713  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 40145551 - 40145491
Alignment:
Q  80 tgtttgtgagaatttatagaaacaacttataacatggccatcaatggttttcagcttattt 140  Q
    |||||| ||||| |||| |||||||||||||||||  |||| ||| |||||| ||||||||    
T  40145551 tgtttgagagaacttatcgaaacaacttataacataaccataaattgttttccgcttattt 40145491  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 5157221 - 5157142
Alignment:
Q  30 tttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttat 109  Q
    |||||||| |||||||||| |||||||    ||||||||| |||| |||||||||| ||||  |||||||||||||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 4055578 - 4055647
Alignment:
Q  71 ttgttaaactgtttgtgagaatttatagaaacaacttataacatggccatcaatggttttcagcttattt 140  Q
    |||| |||||||||| |||| |||||||||| ||||||| ||||| |||| ||  |||||||||||||||    
T  4055578 ttgtaaaactgtttgggagagtttatagaaataacttatgacatgtccataaactgttttcagcttattt 4055647  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 29699422 - 29699343
Alignment:
Q  28 tgtttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttat 109  Q
    |||||||||| |||||||||| ||| |||  |  ||||||||||||  | |||||||| ||||| |||||||||||||||||    
T  29699422 tgtttggattgacttatttgagcttctctgctggcataaacagttg--agactgtttgggagaacttatagaaacaacttat 29699343  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 39551130 - 39551215
Alignment:
Q  30 tttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataacatg 115  Q
    |||||||| ||||||||||  ||||||    | |||| || |||| |||||||||| |||||||||| |||||||||||| |||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatg 39551215  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 32578031 - 32578083
Alignment:
Q  173 aggatagcttatatgaaaacagtttga-ttatagaaatagcttatacataagc 224  Q
    |||||||||||||||| |||| ||||| |||||||||||||||| ||||||||    
T  32578031 aggatagcttatatgagaacaatttgacttatagaaatagcttacacataagc 32578083  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 34939873 - 34939783
Alignment:
Q  50 cttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataacatggccatcaatggttttcagcttattt 140  Q
    ||||||| || ||||||||| |||| |||||||||  ||||  |||  |||||| ||||| ||||| |||| ||| |||||||||||||||    
T  34939873 cttatctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttattt 34939783  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 22232983 - 22232882
Alignment:
Q  28 tgtttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataacatggccatcaatggt 127  Q
    |||||||||| || ||||||| |||||||  |   |||| || |||| ||||||||| ||||| |||||||||||||||||| ||||| |||| ||| ||    
T  22232983 tgtttggattgacgtatttgagcttatctgctggaataagcatttgtgaaactgttt-tgagagtttatagaaacaacttatgacatgtccataaattgt 22232885  T
Q  128 ttt 130  Q
    |||    
T  22232884 ttt 22232882  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 50211886 - 50211801
Alignment:
Q  28 tgtttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaacaacttataaca 113  Q
    |||||||||| |||||||| | |||||||  | |||||| || |||| | |||||||| ||||| ||||  |||||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttataaca 50211801  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 20194954 - 20195014
Alignment:
Q  30 tttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgaga 90  Q
    |||||||| | |||||||| |||||||| || ||||| ||||||| | |||||||||||||    
T  20194954 tttggattgatttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgaga 20195014  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 9316677 - 9316601
Alignment:
Q  27 atgtttggattcacttatttgaccttatcttgttacataaacagttgttaaactgtttgtgagaatttatagaaaca 103  Q
    ||||||||||| |||||||||| || |||   ||||||||||| |||| |||||||||| ||||  |||| ||||||    
T  9316677 atgtttggattgacttatttgagctcatccatttacataaacacttgtgaaactgtttgggagagcttatggaaaca 9316601  T

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