View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13601_low_5 (Length: 372)
Name: NF13601_low_5
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 235685 - 235421
Alignment:
| Q |
9 |
gacatcatcacacccgaagacagagaaacaataagaccaccatcctcactcgatggccatgtcgtcagccacttcaatcctaaaaaagtggtcgctgtca |
108 |
Q |
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| T |
235685 |
gacatcatcacacccgaagacagagaaacaataagaccaccgtcctcacccgatggccatgtcgtcagccacttcaatcctaaaatagtggtcgctgtca |
235586 |
T |
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| Q |
109 |
tgtcccatggaaaaaa-ccctatcattgtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
207 |
Q |
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| T |
235585 |
tgtcccatggaaaaaaaccctatcattgtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
235486 |
T |
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| Q |
208 |
ctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaa |
272 |
Q |
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| T |
235485 |
ctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggttgataaa |
235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 353
Target Start/End: Original strand, 8814023 - 8814264
Alignment:
| Q |
115 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctgg |
211 |
Q |
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| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
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| Q |
212 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtttgtcctgatgattccact |
311 |
Q |
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| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactggacagactgttactgttggaccggatgactcaact |
8814222 |
T |
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| Q |
312 |
gtccggttagttgctgtatctttggttggtggtggggatatt |
353 |
Q |
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| T |
8814223 |
gttcagttagtggctgaatctttgcttgctggcggggatatt |
8814264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 353
Target Start/End: Complemental strand, 247267 - 247069
Alignment:
| Q |
158 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
257 |
Q |
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| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
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| Q |
258 |
tatgtggttgataaaactgggcggactgttactgtttgtcctga---tgattccactgtccggttagttgctgtatctttggttggtggtggggatatt |
353 |
Q |
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| T |
247167 |
tatgcggtagacaaaactggatggacagttggatttggaccggaggatgattccactgtccggttagttgctgaatctttggttggtggtggagatatt |
247069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 353
Target Start/End: Original strand, 251114 - 251308
Alignment:
| Q |
165 |
ccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtgg |
264 |
Q |
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| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcgg |
251213 |
T |
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| Q |
265 |
ttgataaaactgggcggactgttactg------tttgtcctgatgattccactgtccggttagttgctgtatctttggttggtggtggggatatt |
353 |
Q |
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| T |
251214 |
tagacaatactggacggacagttactgttgaacttggacctgaggattccactgtccagttagtggctcaatctttggttggtggtggagatatt |
251308 |
T |
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