View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13601_low_6 (Length: 366)
Name: NF13601_low_6
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24512248 - 24511994
Alignment:
| Q |
1 |
ttaatttctgaaagataattcataaattcaaaggacat--attattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatac |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24512248 |
ttaatttctgaaagataattcataaattcaaaggacgtgtattattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatac |
24512149 |
T |
|
| Q |
99 |
tgcaaa--------ttaaagaggagaggagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggtta |
190 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24512148 |
tgcaaaactgcaaattaaagaggagaggagaagaaagaaaagagatcaagttcaggaaggtgcatgataaaaactatggactcatttaatctaatggttg |
24512049 |
T |
|
| Q |
191 |
ttagacatagtccatcgataagggacttaattgctccctcgtcctagaatccacc |
245 |
Q |
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|||||||| ||||| || | |||||||||||||||||||| |||| |||||||| |
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| T |
24512048 |
ttagacatggtccaccggtgagggacttaattgctccctcaccctaaaatccacc |
24511994 |
T |
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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 28007357 - 28007157
Alignment:
| Q |
52 |
gaacgacaatgggatttgagaaggtgatagatgaaaacaaggaat-----actg--caaattaaagaggagaggagaagatagaaaagagatcaagtgca |
144 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| | ||||||||||||||||| |
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| T |
28007357 |
gaacgacaatgagatttgagaaggtgatagatgaaaacaaggaaggcaacactaaacaaatcaaagaggaaaggagaagaaataaaagagatcaagtgca |
28007258 |
T |
|
| Q |
145 |
ggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccatcgataagggacttaattgctccctcgtcctagaatccac |
244 |
Q |
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||||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||| || | |||||||||||||||||||| |||||||||||| |
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| T |
28007257 |
tgaaggtgtatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccac |
28007158 |
T |
|
| Q |
245 |
c |
245 |
Q |
| |
|
| |
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|
| T |
28007157 |
c |
28007157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 20568024 - 20568167
Alignment:
| Q |
52 |
gaacgacaatgggatttgagaaggtgatagatgaaaacaaggaa--------tactgcaaattaaagaggagaggagaagatagaaaagagatcaagtgc |
143 |
Q |
| |
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|||||||||| |||||||| ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||||| |||||||| |
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| T |
20568024 |
gaacgacaataggatttgaaaaggtgatagatgtaaacaaggaaggcatcaatagagaaaattaaagaggataaaagaagaaagaaaagaggtcaagtgc |
20568123 |
T |
|
| Q |
144 |
aggaaggtgcatgataaaaactatgaactcatttaatctaatgg |
187 |
Q |
| |
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|||||||| |||||||||||| || |||||||||||||||||| |
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| T |
20568124 |
aggaaggtatatgataaaaactgtggactcatttaatctaatgg |
20568167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 29388034 - 29388264
Alignment:
| Q |
9 |
tgaaagataattcataaattcaaaggacat--attattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatac-------- |
98 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||| || || |||| ||||||||||||||||||||||||||| ||||||||||| || |
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| T |
29388034 |
tgaaagataattcataaattcaaatgatatgtattattaaggaatgaacaacaatgggatttgagaaggtgatagataaaaacaaggaagacagcaaaac |
29388133 |
T |
|
| Q |
99 |
tgcaaattaaagaggagaggagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacat |
198 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||| | || |||||||||||||||| ||| |||||||| |
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| T |
29388134 |
tgcaaattagggaggagaggagaagaaagaaaagagatcaaatacaggaaggtgcatgataaaaa-tgtggactcatttaatctaatagttgttagacat |
29388232 |
T |
|
| Q |
199 |
agtccatcgataagggacttaattgctccctc |
230 |
Q |
| |
|
|||||| | |||||||||||||||||||| |
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| T |
29388233 |
agtccactagtgagggacttaattgctccctc |
29388264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 249 - 348
Target Start/End: Complemental strand, 32142386 - 32142287
Alignment:
| Q |
249 |
aattaaacctataagtagtatatattgaattttaggaagcacaaacaccactctaaagtgatttattggagtgttggaaaatttttcaacatcgacaaat |
348 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32142386 |
aattcaacctataagtagtatatattgaatattaggaagcacaaacaacactctaaagtgatttattggagtgttggaaaaattttcaacatcgacaaat |
32142287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 50657155 - 50657191
Alignment:
| Q |
211 |
agggacttaattgctccctcgtcctagaatccaccac |
247 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |
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| T |
50657155 |
agggacttaattgctccctcgccttagaatccaccac |
50657191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 4083573 - 4083701
Alignment:
| Q |
101 |
caaattaaagaggagaggagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatag |
200 |
Q |
| |
|
||||| ||||||||| |||||||| | ||||| |||||||||||| |||||| ||||||||| || | ||||||||||| ||| |||| |||||||| | |
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| T |
4083573 |
caaatgaaagaggag-ggagaagaaataaaagtgatcaagtgcagaaaggtgtatgataaaatctggggactcatttaatttaaaggttgttagacatgg |
4083671 |
T |
|
| Q |
201 |
tccatcgataagggacttaattgctccctc |
230 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |
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| T |
4083672 |
tccaccgatgagggacttaattgctccctc |
4083701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 35606118 - 35605991
Alignment:
| Q |
117 |
ggagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccatcgataagggac |
216 |
Q |
| |
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|||||||| |||||| |||||||||||| |||||| |||||||||| | | ||||||| ||||||| |||| |||||||| ||||| | || |||||| |
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| T |
35606118 |
ggagaagaaagaaaactgatcaagtgcagaaaggtgtatgataaaaattggggactcatt-aatctaaaggttgttagacatggtccaccaatgagggac |
35606020 |
T |
|
| Q |
217 |
ttaattgctccctcgtcctagaatccacc |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
35606019 |
ttaattgctccctcaccctagaatccacc |
35605991 |
T |
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