View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13601_low_8 (Length: 336)
Name: NF13601_low_8
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 5741256 - 5741569
Alignment:
| Q |
1 |
aagaaaacagcaaaaatgcgctgcctaaggctactcgtgccccttgggggtgctgttgcgccccccgagagtgcaaacattgcagtagcgcgcgaggcac |
100 |
Q |
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| T |
5741256 |
aagaaaacggcaaaaatgcgttgcctaaggctactcgtgccccttgggggtgttgttgcgccccccgagagtgcaaacattgaagtagcgcgcgaggcat |
5741355 |
T |
|
| Q |
101 |
accatcccacgttagaggggcatgtgccttcggttgaaaaataactatttttctcatacttagcacctaggagtaaaaagtgtgacatacctagcaccta |
200 |
Q |
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| T |
5741356 |
gccatcccacgttagaggggcatgtgccttcggttgaaaaat---------tctcatacttagcacctaggactaaaaagtgtgacatacctagcaccta |
5741446 |
T |
|
| Q |
201 |
tgactgaacatagaaacatagcaaaaa--ctcttctaaagtttcatac--tatcttattatttaattgtttttactttatgcatctaataagtaacgcta |
296 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
5741447 |
tgactgaacatagaaacatagcaaaaactctcttctaaagtttcatactatatcttatta-ttaattgtttttactttctgcatctaataagtaacacta |
5741545 |
T |
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| Q |
297 |
gttaaatagatcacacacatataa |
320 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
5741546 |
gttaaatagatcacacacatataa |
5741569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 27305046 - 27304994
Alignment:
| Q |
179 |
agtgtgacatacctagcacctatgactgaacatagaaacatagcaaaaactct |
231 |
Q |
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| T |
27305046 |
agtgtgacatacctagcacctatggctgaacctagaaacagagcaaacactct |
27304994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 27748995 - 27749040
Alignment:
| Q |
254 |
ttatttaattgtttttactttatgcatctaataagtaacgctagtt |
299 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| |||||| |
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| T |
27748995 |
ttatttaattgtttttattttctgcatctaataagtaacactagtt |
27749040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 12590821 - 12590863
Alignment:
| Q |
256 |
atttaattgtttttactttatgcatctaataagtaacgctagt |
298 |
Q |
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||||||||||||||| ||| ||||| ||||||||||||||||| |
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| T |
12590821 |
atttaattgtttttattttctgcatttaataagtaacgctagt |
12590863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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