View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13601_low_9 (Length: 333)
Name: NF13601_low_9
Description: NF13601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13601_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 12885767 - 12885451
Alignment:
| Q |
1 |
accaccggagaatttcaaatttgacgtagccggtggaacaattacaccagaagtaaaagatagcattccatcatcattattacttcctctcgaattcggt |
100 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12885767 |
accaccagagaatttcaaatttgaagtagccggtggaacaattacaccagaagtaaaagatagcattccatcatcattattacttcctctcgaattcggt |
12885668 |
T |
|
| Q |
101 |
gatctcctctttccatttccattcccgttcccattattattctcctcagcaacagaaactaactgtgattgaccagagaaaaaattcgaattcgagtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12885667 |
gatctcctctttccatttccattcccgttcccattattattctcctcagcaacagaaactaactgtgattgaccagagaaaaaattcgaattcgagtttc |
12885568 |
T |
|
| Q |
201 |
cattattagcaacataagaactctttttactctcaccaaaacacaaaatatcaccggattccggcttcaacaaacgttgctgattggtactcccaccata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
12885567 |
cattattagcaacataagaactctttttactctcaccaaaacacaaaatatcaccggattcaggcttcaacaaacgttgctgattgttactcccaccata |
12885468 |
T |
|
| Q |
301 |
atcagaaagattcattt |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
12885467 |
atcagaaagattcattt |
12885451 |
T |
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