View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13602_low_2 (Length: 212)
Name: NF13602_low_2
Description: NF13602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13602_low_2 |
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| [»] chr2 (7 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 2321179 - 2321369
Alignment:
| Q |
23 |
acttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccaggg-cattttttgttggcacacgcggtgaaagaggatg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
2321179 |
acttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttggcacacacggtgaaagaggatg |
2321278 |
T |
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| Q |
122 |
tggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
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| T |
2321279 |
tggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
2321369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2303474 - 2303667
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
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||||| |||||||||||||| |||||||| || || ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
2303474 |
gaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgccacacgcggtgaaagagg |
2303573 |
T |
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| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
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| T |
2303574 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtgtttgggaggatcc |
2303667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 2293861 - 2294051
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| | ||| |||| |||||||||||||||||| |
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| T |
2293861 |
gaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgccacacgcggtgaaagagg |
2293960 |
T |
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| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggagga |
209 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |
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| T |
2293961 |
atgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttcttgctggcggagatggcgttggatcctcgtgtttgggagga |
2294051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2327029 - 2327222
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
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||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | || || |||| || | |
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| T |
2327029 |
gaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtgagcgatg |
2327128 |
T |
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| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | ||||||| || |||||||||||||||||||||||| |
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| T |
2327129 |
atgtggttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatcc |
2327222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 2310192 - 2310382
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
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|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| | ||| | ||| |||| |||||||||||||||||| |
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| T |
2310192 |
gaagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgcggtgaaagagg |
2310291 |
T |
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| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggagga |
209 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||| ||||| ||||||||||||||| |
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| T |
2310292 |
atgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttctttctggcggagatggcgttggatcgtcgtgtttgggagga |
2310382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2330744 - 2330937
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||| |||| |
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| T |
2330744 |
gaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtgagcgagg |
2330843 |
T |
|
| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||| ||| | | ||||||| || ||| |||||||||||||||||||| |
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| T |
2330844 |
atgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcagagatggggttggaccctcgtgtttgggaggatcc |
2330937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2351050 - 2351243
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
| |
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||||| |||||||||||| ||| |||| || |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||| ||||| |
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| T |
2351050 |
gaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttgccacacgcggtgacagagg |
2351149 |
T |
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| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||| ||||| ||| || | ||||||| ||||||||||||||||||||||||||| |
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| T |
2351150 |
atgtgctttttaacggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatcc |
2351243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 41127056 - 41127249
Alignment:
| Q |
19 |
gaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagagg |
118 |
Q |
| |
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|||||||||||||| || | |||| | ||||| ||| ||||||||||| ||||| |||| ||||| ||||| ||| ||||| | || |||||||| |||| |
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| T |
41127056 |
gaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtgaaggagg |
41127155 |
T |
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| Q |
119 |
atgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
| |
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|||||||||| ||||||| ||| |||||||||||| | |||||||||||| || | || || | | |||| ||| |||||||||| ||||| |
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| T |
41127156 |
atgtggttttcgacggttacttgctgcctaaaaatgtggtagtgaatttcatggtggcagacatagggagggaccctagtgtttgggaagatcc |
41127249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 26506761 - 26506858
Alignment:
| Q |
115 |
gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatcc |
212 |
Q |
| |
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||||||||| |||| |||||||| |||||||||||||||||||| || ||||| ||| || | ||| | | ||||||||| |||||||||||||||| |
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| T |
26506761 |
gaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcagaggttgggtgggatccaagtgtttgggaggatcc |
26506858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 26494716 - 26494768
Alignment:
| Q |
115 |
gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaattt |
167 |
Q |
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|||||| | |||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
26494716 |
gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattt |
26494768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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