View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13603_low_1 (Length: 1179)

Name: NF13603_low_1
Description: NF13603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13603_low_1
NF13603_low_1
[»] chr6 (23 HSPs)
chr6 (204-493)||(31565162-31565451)
chr6 (535-800)||(31565454-31565719)
chr6 (987-1160)||(31565922-31566095)
chr6 (827-990)||(31565718-31565883)
chr6 (204-370)||(33414293-33414459)
chr6 (204-360)||(33383760-33383916)
chr6 (29-139)||(33414524-33414634)
chr6 (29-139)||(33269497-33269607)
chr6 (229-360)||(33351400-33351530)
chr6 (204-314)||(33292802-33292912)
chr6 (532-643)||(33413910-33414021)
chr6 (18-139)||(33383981-33384106)
chr6 (243-346)||(33258067-33258170)
chr6 (38-128)||(33292988-33293078)
chr6 (386-542)||(33414090-33414254)
chr6 (208-280)||(33269355-33269427)
chr6 (532-614)||(33351038-33351120)
chr6 (29-139)||(33395008-33395118)
chr6 (18-72)||(31565063-31565117)
chr6 (374-512)||(33351212-33351363)
chr6 (29-102)||(33258187-33258261)
chr6 (230-270)||(31567428-31567468)
chr6 (667-717)||(33413817-33413867)
[»] chr2 (6 HSPs)
chr2 (204-370)||(17445747-17445910)
chr2 (388-464)||(17445951-17446026)
chr2 (532-606)||(17446159-17446233)
chr2 (67-139)||(17445607-17445679)
chr2 (29-96)||(17447915-17447982)
chr2 (654-718)||(17446284-17446348)
[»] scaffold0428 (2 HSPs)
scaffold0428 (243-346)||(2188-2291)
scaffold0428 (29-102)||(2308-2382)
[»] chr5 (1 HSPs)
chr5 (1082-1132)||(11662859-11662909)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 204 - 493
Target Start/End: Original strand, 31565162 - 31565451
Alignment:
Q  204 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
Q  304 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 403  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 31565361  T
Q  404 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565362 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 31565451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 535 - 800
Target Start/End: Original strand, 31565454 - 31565719
Alignment:
Q  535 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctttga 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31565454 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagccactctttga 31565553  T
Q  635 ttacagtatacaaatattgtgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacatgagt 734  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565554 ttacagtatacaaatattgtgaaatttactctataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacatgagt 31565653  T
Q  735 tttgcttccgtgttcatagagcttgattgtaagcaagtggataaatggctccttttgtaagctctt 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31565654 tttgcttccgtgttcatagagcttgattgtaagcaagtggataaatggcaccttttgtaagctctt 31565719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 987 - 1160
Target Start/End: Original strand, 31565922 - 31566095
Alignment:
Q  987 cttatcaactttcttttgctcttcaacctcaaaacccataaccatcataaattccaacaacaactgaagctgtttctttctgaggtttctgttactttct 1086  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565922 cttatcaactttcttttgctcttcaacctcaaaacccataaccatcataaattccaacaacaactgaagctgtttctttctgaggtttctgttactttct 31566021  T
Q  1087 cacctcctccagcgctttctcaaagacttgctgccactcttttcgacgataaagacatcgaatttgattgactt 1160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31566022 cacctcctccagcgctttctcaaagacttgctgccactcttttcgacgataaagacatcgaatttgatcgactt 31566095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 827 - 990
Target Start/End: Original strand, 31565718 - 31565883
Alignment:
Q  827 ttcatattcataaagagcttacagaaggtgccaattatgagtgt--taatgaatatggtagaatgtttcaatttatgggtataaaaaataacacaattat 924  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31565718 ttcatattcataaagagcttacaaaaggtgccaattatgagtgtgttaatgaatatggtagaatgtttcaatttatggatataaaaaataacacaattat 31565817  T
Q  925 tggcaccttttcttcatctttgggaatgaaatgacgaaagtgcccttacttttcctcaacccctta 990  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565818 tggcaccttttcttcatctttgggaatgaaatgacgaaagtgcccttacttttcctcaacccctta 31565883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 33414459 - 33414293
Alignment:
Q  204 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 303  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
Q  304 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 370  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 33383916 - 33383760
Alignment:
Q  204 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 303  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
Q  304 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactct 360  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
T  33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttcactct 33383760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 33414634 - 33414524
Alignment:
Q  29 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 128  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  33414634 agaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaacta 33414535  T
Q  129 ctgtgacgaag 139  Q
     ||||||||||    
T  33414534 ttgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 33269607 - 33269497
Alignment:
Q  29 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 128  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  33269607 agaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaacta 33269508  T
Q  129 ctgtgacgaag 139  Q
     ||||||||||    
T  33269507 ttgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 229 - 360
Target Start/End: Complemental strand, 33351530 - 33351400
Alignment:
Q  229 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 328  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
Q  329 attactgtgcggcgttttgttcggttcactct 360  Q
    ||||  | ||||||||||||||||||||||||    
T  33351431 attaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
Q  204 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 303  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
T  33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
Q  304 aagtatagctg 314  Q
    |||||||||||    
T  33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 532 - 643
Target Start/End: Complemental strand, 33414021 - 33413910
Alignment:
Q  532 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctt 631  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||  | ||||| |||||||    
T  33414021 aggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataataatcattaatcattgatctgtttgaagataggcactctt 33413922  T
Q  632 tgattacagtat 643  Q
    || ||| |||||    
T  33413921 tgcttatagtat 33413910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 33384106 - 33383981
Alignment:
Q  18 actttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttg----tccacaggttcagtttgtatctattgaag 113  Q
    ||||| |||| |||||||||||| | |||||||| ||| ||||||||||||||||||| ||||||||    |||| ||||||||||||||||| ||||||    
T  33384106 actttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaag 33384007  T
Q  114 atattcctaaaaccactgtgacgaag 139  Q
    |||||| | |||||| ||||||||||    
T  33384006 atattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
Q  243 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 342  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
Q  343 tttt 346  Q
    ||||    
T  33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
Q  38 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 128  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 386 - 542
Target Start/End: Complemental strand, 33414254 - 33414090
Alignment:
Q  386 gttttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaa---------tcataataaccaaa 476  Q
    |||||||||| ||||| | ||||||||||||||||||||||||| |  |||||||||| |||||||| |||||||||         ||||||||||||||    
T  33414254 gttttcaagagaagtaatcgttgcattttcataggaagaagtatgcggcagagtgagaccaattttg-aaacagaaatctgcttcttcataataaccaaa 33414156  T
Q  477 tgttgattagacgccaatacattttactgatatgtatctctatcgaggatagatgaggtctgaatt 542  Q
    |||||||||| |||  | || |||||||||| ||||||| ||| ||||||| |||||| |||||||    
T  33414155 tgttgattaggcgcggacacgttttactgatctgtatctgtattgaggatacatgaggactgaatt 33414090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
Q  208 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 280  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 532 - 614
Target Start/End: Complemental strand, 33351120 - 33351038
Alignment:
Q  532 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctatt 614  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  33351120 aggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataataatcattaatcattgatctatt 33351038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 33395118 - 33395008
Alignment:
Q  29 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 128  Q
    |||||||| | |||||||||||| |||  ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  33395118 agaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaacca 33395019  T
Q  129 ctgtgacgaag 139  Q
     || |||||||    
T  33395018 ttgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 31565063 - 31565117
Alignment:
Q  18 actttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 72  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565063 actttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 374 - 512
Target Start/End: Complemental strand, 33351363 - 33351212
Alignment:
Q  374 atagcttaaaaagttttcaagaaaagtatttgt---tgcattttcataggaagaagtatacaacagagtgagatcaa-ttttgaaaacagaaa------- 462  Q
    |||||||| || | |||||||| ||||||||||   ||||||||||||||||||||||| |  | |||||||||||| |||||||||||||||           
T  33351363 atagcttacaacgctttcaagacaagtatttgtctttgcattttcataggaagaagtatgctgcggagtgagatcaatttttgaaaacagaaatcttgtt 33351264  T
Q  463 --tcataataaccaaatgttgattagacgccaatacattttactgatatgta 512  Q
      |||||||||||||||||||||||| |||  | ||||||||||||| ||||    
T  33351263 cttcataataaccaaatgttgattaggcgcggacacattttactgatctgta 33351212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 33258261 - 33258187
Alignment:
Q  29 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 102  Q
    |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  33258261 agaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
Q  230 ttaggagagcttgctcttctagagcagcctttcattaagga 270  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 717
Target Start/End: Complemental strand, 33413867 - 33413817
Alignment:
Q  667 ataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagt 717  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  33413867 ataagttatgcgtatatctaagaagtggaagcttaaagggagcgataaagt 33413817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 3e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 17445747 - 17445910
Alignment:
Q  204 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 303  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
T  17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
Q  304 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 370  Q
    |||||||||||| ||||| |||    |||  ||||||||||||||| |||||||||  |||||||||    
T  17445847 aagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 17445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 388 - 464
Target Start/End: Original strand, 17445951 - 17446026
Alignment:
Q  388 tttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatc 464  Q
    |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  17445951 tttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttg-aaacagaaatc 17446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 532 - 606
Target Start/End: Original strand, 17446159 - 17446233
Alignment:
Q  532 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcatt 606  Q
    |||| |||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||    
T  17446159 aggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt 17446233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
Q  67 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 139  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 17447915 - 17447982
Alignment:
Q  29 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttca 96  Q
    ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||    
T  17447915 agaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 654 - 718
Target Start/End: Original strand, 17446284 - 17446348
Alignment:
Q  654 tgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagtt 718  Q
    |||||||| || |||||||||||| |||||||   ||||| ||||||||||||||| ||||||||    
T  17446284 tgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaagcaataaagtt 17446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
Q  243 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 342  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
Q  343 tttt 346  Q
    ||||    
T  2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 2382 - 2308
Alignment:
Q  29 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 102  Q
    |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  2382 agaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1082 - 1132
Target Start/End: Complemental strand, 11662909 - 11662859
Alignment:
Q  1082 tttctcacctcctccagcgctttctcaaagacttgctgccactcttttcga 1132  Q
    |||||||||||||| || |||||||||||||| |||| | |||||||||||    
T  11662909 tttctcacctcctcgagagctttctcaaagacctgctcctactcttttcga 11662859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University