View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13603_low_3 (Length: 434)
Name: NF13603_low_3
Description: NF13603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13603_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 45666452 - 45666862
Alignment:
| Q |
19 |
cacaatgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaatacagcacctttctcctcctttcctctctaacattaaatat |
118 |
Q |
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| T |
45666452 |
cacaatgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaatacagcacctttctcctcctttcctctc-aacattaaatat |
45666550 |
T |
|
| Q |
119 |
ttttt-gtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagag |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666551 |
ttttttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagag |
45666650 |
T |
|
| Q |
218 |
gtatttctacaccaaataatagtattaaggttgacgagtctttcttttcttttcgt---acttcaatagcannnnnnngtgaatttgttggctgattccc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||| |
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| T |
45666651 |
gtatttctacaccaaataatagtattaaggttgacgagtctttcttttcttttcgtcgtactttaatagcatttttttgtgaattttttggctgattccc |
45666750 |
T |
|
| Q |
315 |
attttttgcaacatacatatatgccatggcatatataattaactgaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttgg |
414 |
Q |
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|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666751 |
attttt-gtaacatgcatatatgccatggcatatataattaactgaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttgg |
45666849 |
T |
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| Q |
415 |
tcaagctactttc |
427 |
Q |
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| T |
45666850 |
tcaagctactttc |
45666862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 37973790 - 37973690
Alignment:
| Q |
121 |
tttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggta |
220 |
Q |
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||||||| | ||||| ||||||||||||||||| |||| ||| ||||| | | ||||| ||||| || ||| |||| ||||||||||||||||||||| |
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| T |
37973790 |
tttgtttttggcagtctgcttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggta |
37973691 |
T |
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| Q |
221 |
t |
221 |
Q |
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| T |
37973690 |
t |
37973690 |
T |
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