View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13603_low_5 (Length: 343)
Name: NF13603_low_5
Description: NF13603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13603_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 7657763 - 7657484
Alignment:
| Q |
20 |
acattcttatttccatttttaccctctggcattccacctccatttttgccaccattgttcttattacctccaccttgattctgactctgattatttccac |
119 |
Q |
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| T |
7657763 |
acattcttatttccatttttaccctctggcattccacctccatttttgccaccattgttcttattacctccaccttgattctgactctgattatttccgc |
7657664 |
T |
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| Q |
120 |
cgccacccccaccacctttctttccaccacccaagccatgaacttgaacaggcacaggtcctcctcctccacctttctttccat------------ttcc |
207 |
Q |
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| T |
7657663 |
caccaccaccaccacctttctttccaccacccaagccatgaacttgaacaggcacagg---tcctgctccacctttctttccattgcctccaccacttcc |
7657567 |
T |
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| Q |
208 |
aacacccttttgagcattcatcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaaggatgttcca |
290 |
Q |
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| T |
7657566 |
aacacccttttgagcattcatcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaaggatgttcca |
7657484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 7652153 - 7652086
Alignment:
| Q |
214 |
cttttgagcattcatcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaag |
281 |
Q |
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| T |
7652153 |
cttttgagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaag |
7652086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 7652318 - 7652262
Alignment:
| Q |
88 |
tccaccttgattctgactctgattatttccaccgccacccccaccacctttctttcc |
144 |
Q |
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| T |
7652318 |
tccaccttgattctgaatctgattatttccaccttcgccaccaccacctttctttcc |
7652262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 7652350 - 7652312
Alignment:
| Q |
20 |
acattcttatttccatttttaccctctggcattccacct |
58 |
Q |
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| T |
7652350 |
acattcttatttccatttttaccttctggcattccacct |
7652312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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