View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13604_high_3 (Length: 292)
Name: NF13604_high_3
Description: NF13604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13604_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 26620307 - 26620062
Alignment:
| Q |
30 |
tggccttaaacaagccagtagaaaatgatatgaaagattaacttctttgcttgttcaacatgaatacacacaagctgcatcagatcattctttattcacg |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
26620307 |
tggccttaaacaagcaagtagaaaatgatatgaaagattaacttctttgcttgttcaacatgaatacacacaagctgcatcaaatcattctttattcgcg |
26620208 |
T |
|
| Q |
130 |
aaaaccaccctttgattattcactcttttactggtttatgttgatgatttgattctggctggaaactccctctccgagttttctttcataaaaagtgttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
26620207 |
aaaaccaccctttgattattcactcttttactggtttatgttgatgatgtgattctggctggaaactccctctccaagttttctttcataaaaagagttc |
26620108 |
T |
|
| Q |
230 |
tccacacttcatttcaaatcaaggatttaggtcaactcaaatattt |
275 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26620107 |
tccacgcttcatttcaaatcaaggatttaggtcaactcaaatattt |
26620062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 2654505 - 2654433
Alignment:
| Q |
30 |
tggccttaaacaagccagtagaaaatgatatgaaagattaacttctttgcttgttcaacatgaatacacacaa |
102 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||||||||||| ||| |||| |||| |||| ||||| |
|
|
| T |
2654505 |
tggcctcaaacaagttggtagaaaatggcatgaaagattaacttctttacttattcatcatggatacgcacaa |
2654433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University