View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13604_low_1 (Length: 834)
Name: NF13604_low_1
Description: NF13604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13604_low_1 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 764; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 11 - 819
Target Start/End: Original strand, 44489174 - 44489982
Alignment:
| Q |
11 |
catcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatatcatgaaatatccatttgttgcattgatagtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489174 |
catcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatatcatgaaatatccatttgttgcattgatagtg |
44489273 |
T |
|
| Q |
111 |
ttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaatgtccgtaaccaaaacaccactttgat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44489274 |
ttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaatgtccctaaccaaaacaccactttgat |
44489373 |
T |
|
| Q |
211 |
catcatcatcatgggtttctcctccgcctcttgaagaatggtaaatgactctggttcgatttgacatcttcataggcaatctaccgtttttgaaacgagg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489374 |
catcatcatcatgggtttctcctccgcctcttgaagaatggtaaatgactctggttcgatttgacatcttcataggcaatctaccgtttttgaaacgagg |
44489473 |
T |
|
| Q |
311 |
atgcaacccggtagaattccataatgtcttgttcnnnnnnncatgcacccaaccctttgtgaatagatcaagtgaaacactgtggagtttgctatcatta |
410 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44489474 |
atgcaacccggtagaattccataatgtcttgttctttttttcatgcacccaaccctttgtgaatagatcaagtgaaacactgtagagtttgctatcatta |
44489573 |
T |
|
| Q |
411 |
gagagttggctaataagatcattttctatagtcaaattagaattagccacagtaattagtccatctaaacatgtttgatggttggttataaccgcactta |
510 |
Q |
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| T |
44489574 |
gagagttggctaataagatcattttctatagtcaaattagaattagccacggtaattagtccatctaaacatgtttgatggttggttataaccgcactta |
44489673 |
T |
|
| Q |
511 |
gaagggtttgagtatcatcaacttgggaggtgtagagagtttcattagtatttttgagtgcaacataattggattttgataagtattgggaggtgagttg |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44489674 |
gaagggtttgagtatcatcaacttgggaggtgtagagagtttcattagtatttttgagtgcaacataattggattttgataagtattgtgaggtgagttg |
44489773 |
T |
|
| Q |
611 |
ggagagaaataaacaatctttgagagcatttattgcctctttggtaaaagtagactcaagatagaagttcaatgagttcaaaaacttttgggactgaaac |
710 |
Q |
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| T |
44489774 |
ggagagaaataaacaatctttgagagcatttattgtctctttggtaaaagtagactcaagatagaagttcaatgagttcaaaaatttttgggactgaaac |
44489873 |
T |
|
| Q |
711 |
atggatttttgaattgagaatctagcaaagtcatggactttggcattttgttttggaagtagatttgtgcaataagatggatattgggatgatttacaaa |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489874 |
atggatttttgaattgagaatctagcaaagtcatggactttggcattttgttttggaagtagatttgtgcaataagatggatattgggatgatttacaaa |
44489973 |
T |
|
| Q |
811 |
tggtttctg |
819 |
Q |
| |
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||||||||| |
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| T |
44489974 |
tggtttctg |
44489982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 44464892 - 44464956
Alignment:
| Q |
111 |
ttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaac |
175 |
Q |
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| T |
44464892 |
ttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
44464956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 24061844 - 24061920
Alignment:
| Q |
108 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaat |
184 |
Q |
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| T |
24061844 |
gtgttatttggtgcagcagctattgcatcattgatagtggtgaagtttccacttccatcttgactaacaacaacaat |
24061920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 39450421 - 39450346
Alignment:
| Q |
108 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
183 |
Q |
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| T |
39450421 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
39450346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 39471293 - 39471218
Alignment:
| Q |
108 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
183 |
Q |
| |
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| T |
39471293 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
39471218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 3200 - 3275
Alignment:
| Q |
108 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
183 |
Q |
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||||||||||| |||||||| || || |||||||| | |||||||||||||| ||||||||||||||||| |||| |
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| T |
3200 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
3275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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