View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13604_low_2 (Length: 612)

Name: NF13604_low_2
Description: NF13604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13604_low_2
NF13604_low_2
[»] chr3 (8 HSPs)
chr3 (235-607)||(8584154-8584526)
chr3 (18-239)||(8578668-8578889)
chr3 (487-576)||(34142968-34143057)
chr3 (231-288)||(8553445-8553502)
chr3 (364-436)||(8553283-8553354)
chr3 (127-159)||(8553908-8553940)
chr3 (500-552)||(27634221-27634273)
chr3 (500-552)||(34519038-34519090)
[»] chr8 (1 HSPs)
chr8 (483-576)||(30187802-30187895)
[»] chr4 (5 HSPs)
chr4 (500-576)||(15041684-15041760)
chr4 (500-576)||(15112664-15112740)
chr4 (500-576)||(15039955-15040031)
chr4 (500-576)||(15114393-15114469)
chr4 (510-576)||(16003507-16003573)
[»] chr7 (2 HSPs)
chr7 (511-576)||(10867992-10868057)
chr7 (511-576)||(10866275-10866340)
[»] chr6 (2 HSPs)
chr6 (487-576)||(34244714-34244803)
chr6 (501-576)||(30580036-30580111)


Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 235 - 607
Target Start/End: Original strand, 8584154 - 8584526
Alignment:
Q  235 agccacattccatgtgatactctgcagtatagtatcacagattgcaatacaatcgtaatgtgaatgtgatttaaaaccttgtaatcaaatagtccttata 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8584154 agccacattccatgtgatactctgcagtatagtatcacagattgcgatacaatcgtaacgtgaatgtgatttaaaaccttgtaatcaaatagtccttata 8584253  T
Q  335 ggaatcgtgtaaataatataatataaggctactttgcagcaatacagaaaagaatgttgatcttttaggtcaccaaaatgtagctgattaggtcaatgta 434  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584254 ggaatcgtgtaaatgatataatataaggctactttgcagcaatacagaaaagaatgttgatcttttaggtcaccaaaatgtagctgattaggtcaatgta 8584353  T
Q  435 atgttgagataacaatagttagtagagttagttaaggtagttatagacttatagttgggtaaaaattagttacagagaactatagttagttacttgtagt 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584354 atgttgagataacaatagttagtagagttagttaaggtagttatagacttatagttgggtaaaaattagttacagagaactatagttagttacttgtagt 8584453  T
Q  535 taggaaaattgaggtctataaaaggaccaaccatgtactcataatgaattctaagggttttccctatgcttct 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8584454 taggaaaattgaggtctataaaaggaccaaccatgtactcataatgaattctaagggttttccctatgtttct 8584526  T

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Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 8578668 - 8578889
Alignment:
Q  18 gaaacatcaacatcgttatcttgttaagtttataggtttatggaggttagaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578668 gaaacatcaacatcgttatcttgttaagtttataggtttatggaggttagaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagt 8578767  T
Q  118 gtcgtgtgaactgtggagagttgactattcaagactaagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaatacaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578768 gtcgtgtgaactgtggagagttgactattcaagactaagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaatacaatt 8578867  T
Q  218 gtgattgatttcatatcagcca 239  Q
    ||||||||||||||||||||||    
T  8578868 gtgattgatttcatatcagcca 8578889  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 487 - 576
Target Start/End: Original strand, 34142968 - 34143057
Alignment:
Q  487 agttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    |||||| ||||  ||||||| ||||| ||||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  34142968 agttggttaaatgttagttagagagagctatagttagttacaagtagttagggtaattgagttctataaaaggaccaaccatgtactcat 34143057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 8553502 - 8553445
Alignment:
Q  231 tatcagccacattccatgtgatactctgcagtatagtatcacagattgcaatacaatc 288  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||| ||| ||||    
T  8553502 tatcaaccacatttgatgtgatactctgcagtatagtatcacagattgcgatagaatc 8553445  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 8553354 - 8553283
Alignment:
Q  364 tactttgcagcaatacagaaaagaatgttgatcttttaggtcaccaaaatgtagctgattaggtcaatgtaat 436  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||  |||||| ||||| ||||||||||||    
T  8553354 tactttgcagctatacagaaaatt-tgttgatcttttaggtcaccatcatgtagttgattgggtcaatgtaat 8553283  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 8553940 - 8553908
Alignment:
Q  127 actgtggagagttgactattcaagactaagttt 159  Q
    |||||||||||||||||||||||||||||||||    
T  8553940 actgtggagagttgactattcaagactaagttt 8553908  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 552
Target Start/End: Complemental strand, 27634273 - 27634221
Alignment:
Q  500 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtcta 552  Q
    ||||||| ||||||||||||||||||||  |||||||||  ||||||||||||    
T  27634273 ttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 27634221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 552
Target Start/End: Complemental strand, 34519090 - 34519038
Alignment:
Q  500 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtcta 552  Q
    ||||||| ||||||||||||||||||||  |||||||||  ||||||||||||    
T  34519090 ttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 34519038  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 483 - 576
Target Start/End: Complemental strand, 30187895 - 30187802
Alignment:
Q  483 ttatagttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||    
T  30187895 ttatagttggttaaaaattagttacagagaactataattagttacatgtagttaaggaaattgaggtctataaaaggaccaatcatgtactcat 30187802  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 15041760 - 15041684
Alignment:
Q  500 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    ||||||| ||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15041760 ttagttagagagaactatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15041684  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 500 - 576
Target Start/End: Original strand, 15112664 - 15112740
Alignment:
Q  500 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    ||||||| ||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15112664 ttagttagagagaactatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15112740  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 15040031 - 15039955
Alignment:
Q  500 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    ||||||| ||||||| ||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15040031 ttagttagagagaacaatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15039955  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 576
Target Start/End: Original strand, 15114393 - 15114469
Alignment:
Q  500 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    ||||||| ||||||| ||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15114393 ttagttagagagaacaatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15114469  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 576
Target Start/End: Original strand, 16003507 - 16003573
Alignment:
Q  510 agaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||||||||||||| |||||||    
T  16003507 agaactatagttagttacaagtagttagggtaattgaggtctataaaaggaccaaccatatactcat 16003573  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 511 - 576
Target Start/End: Original strand, 10867992 - 10868057
Alignment:
Q  511 gaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    |||||||||||||||||   ||||||||  ||||||||||||||||||||||||||||||||||||    
T  10867992 gaactatagttagttacaactagttagggtaattgaggtctataaaaggaccaaccatgtactcat 10868057  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 576
Target Start/End: Original strand, 10866275 - 10866340
Alignment:
Q  511 gaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    |||||||||||||||||   ||||||||  ||||||| | ||||||||||||||||||||||||||    
T  10866275 gaactatagttagttacaactagttagggtaattgagatttataaaaggaccaaccatgtactcat 10866340  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 487 - 576
Target Start/End: Original strand, 34244714 - 34244803
Alignment:
Q  487 agttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    |||||| ||||  ||||||| ||||||||||||||||||||  ||||||| |   ||||||||||||||||||||||||||| |||||||    
T  34244714 agttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaaccatatactcat 34244803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 576
Target Start/End: Complemental strand, 30580111 - 30580036
Alignment:
Q  501 tagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 576  Q
    |||||| ||||||||||||||||||||  |||||||||  ||||||||||||||| | || |||||||| ||||||    
T  30580111 tagttagagagaactatagttagttacaagtagttagggtaattgaggtctataatatgatcaaccatgaactcat 30580036  T

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